Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq1231 360 7e-95 >seq1231 Length=29534 Score = 360 bits (398), Expect = 7e-95 Identities = 647/924 (70%), Gaps = 31/924 (3%) Strand=Plus/Minus Query 45231 AACCAGTGATGCTCGGGCAA-GGCATGAACCTGCAGC---AGGCCCACACCTGTGTGTAC 45286 |||| |||||||| ||||| |||| |||||||||| | |||| | |||| | Sbjct 4094 AACCGGTGATGCT-GGGCAGCGGCACCAACCTGCAGCGCCACTGCCACCGCGCCGTGTTC 4036 Query 45287 ATCGGCATCACGCA-CAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTT 45345 ||||| | | || |||||||||||| | |||||| | |||||| | ||||| || Sbjct 4035 GTCGGCGT-AGGCTTCAAGTTCAACGACTTCATCCAGGCGATCCACCGGCTCCAGCGCTT 3977 Query 45346 CGGCCAAACCCATCCCTGCAAAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGT 45405 | || | || || | | | | | | |||||| ||||||| |||||||| || || Sbjct 3976 CCAGCAGTCGCACCCGGTCGAGGTCGACATCATCCACGCCGAAACTGAGCGGGAGGTCGT 3917 Query 45406 GCGGGTCATCCGCGAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACAT 45465 ||| | | | | | ||| ||||| | ||| ||| ||| | ||| |||| || Sbjct 3916 GCGCGACCTGCAGGCGAAGTGGGCGCGTCACGAGGAGCTGAGCGCCCGCATGTCCGAGAT 3857 Query 45466 CATTCATGAGTACGGACTTGACCCCGAAG-CGATCTCCGAGGCGCTGCAACGCTCCATCG 45524 ||| | || || || || | | || | || ||| | | |||| | ||||| |||| Sbjct 3856 CATCCGCGAATATGGCCTGCAGCATGACGTCGCCCTCGGCG-CGCTCAAGCGCTCGATCG 3798 Query 45525 GATGTGAGCGCATCGAAGCATCCGGTGAGGGATGGGTGTTCGCCAACAACGACTGCGTTC 45584 | ||||| || | | || || || ||| | | || ||||||||||||| Sbjct 3797 GCGTCGAGCGGCAGGAGGTCACTGGCGACGGCTGGACGCTGGCGCACAACGACTGCGTCG 3738 Query 45585 ACGAAACCAAGAGCATGGCAGACGATTCGGTGGATCTGATTGTCACCAGCATTCCGTTCT 45644 | || | | ||| || | ||||| || ||||| |||||| ||| |||||| Sbjct 3737 ATGAGGCTGCCCGGCTGGACGAAGGATCGGTCGACCTGATCGTCACCTCCATCCCGTTCA 3678 Query 45645 CCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGAGC 45704 ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || Sbjct 3677 GCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACGGACGATGACGGGC 3618 Query 45705 ACTTCTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCTCGCCGGGCC 45764 | |||| ||||||||| | || || ||| | ||||| || || ||||||||| Sbjct 3617 ATTTCTTCGCGCAGATGGATCATCTGACGCCGAACCTGCTCCGTGCGCTGGCGCCGGGCC 3558 Query 45765 GTATCTACGCCTGC---CACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCG 45821 | || |||||| ||||| |||||||| ||| ||||||| || ||||||| | Sbjct 3557 GGCTC---GCCTGCATCCACGTGAAGGACCGGATCCTGTTCGGTGCAGTGACCGGCGAGG 3501 Query 45822 GCGTGCCCACGGTGTCCCCGTTCCACGCCGAGGCGATCTTCCAC-GGACGCAAACACGGC 45880 | ||||| || || |||||||||||| || ||| ||| | || |||||| Sbjct 3500 GTGTGCCGACCGTCAATCCGTTCCACGCCAAGTGCATCGAGCACTATATGC-GCCACGGC 3442 Query 45881 TTCGACTACCTCGGCATGATCACCGTCGTCACCGATGTGGTCCGGGAAAACAACCAGACG 45940 ||| | | | | ||||||||||||||||||||||| || || || || ||||||||||| Sbjct 3441 TTCCAGTTCATGGGCATGATCACCGTCGTCACCGACGTCGTGCGCGAGAACAACCAGACC 3382 Query 45941 TACCGGCTGGGCTGGTCCGAGC-AG-TGC--AAAGACGCCACCAAGATGGGCGTCGGCTC 45996 ||||| ||| | || | ||| || ||| || |||| ||| ||||||||| |||| Sbjct 3381 TACCGCCTG---TCGTAC-AGCGAGATGCTGAAGGACGGCACGAAGATGGGCTGCGGCAG 3326 Query 45997 CCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGACAGGTCGAAGGGATACGCCGA 46056 ||| |||||| | |||||| | | ||| ||||||| ||| | || || || ||||| Sbjct 3325 CCCCGAATACGTGCTGCTGATGCGCAAGCCGCAAAGCGACCGCTCACGCGGTTATGCCGA 3266 Query 46057 CACACCCGTCACCAAATCCAAGGACGA---CTACACCCGTGCCCGTTGGCAGGTGGACGC 46113 ||| || |||||||| || | ||| ||||| || || || |||||||| ||||| Sbjct 3265 CACGCCGGTCACCAA--GGAACG-CGAGAGCTACAGCCTGGCGCGGTGGCAGGTCGACGC 3209 Query 46114 GCACGCATTCTGGCGCTCGAGCGG 46137 ||||| ||||||||||| ||||| Sbjct 3208 CCACGCCTTCTGGCGCTCCAGCGG 3185 Score = 251 bits (278), Expect = 3e-62 Identities = 284/375 (76%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 44525 TTCACGGCCGTTTCACTCGACGAAGCGAGCGTGCTGCGCTCGTTCGGGTCTAAGACGTAC 44584 ||||| ||||| || ||||| |||||| | || |||||||||||||| ||||| | | Sbjct 5773 TTCACCGCCGTCAGCCTGGACGAGGCGAGCATCCTCCGCTCGTTCGGGTCAAAGACCTTC 5714 Query 44585 CAGTCGTTCCTGGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCGACGGCCACGCCA 44644 ||| |||||||| ||| ||||| |||||||| ||||| | |||||||| ||||| || Sbjct 5713 CAGACGTTCCTGCCGCTATTCGAGGCGGTGCCGTACCGATTTGTCGCGACCGCCACCCCC 5654 Query 44645 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGACACC 44704 ||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||||||| Sbjct 5653 TCGCCCAACCGCTACAAGGAGCTGATCCATTACGCCGGTTTCCTCGGCGTGATGGACACC 5594 Query 44705 GGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAACCTCACCCT 44763 || |||||||| || | |||||||| || ||| |||||| | | |||||||| Sbjct 5593 GGCCAAGCGCTCACCCGCTTCTTCCAGCGCAACAGCGA-GAAGGCGGGCGATCTCACCCT 5535 Query 44764 GTACCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTCAACACCTGGGCGGCGTTCGTGCA 44823 ||||| |||||||| | ||||||| ||||||| || | |||||| | ||| |||| Sbjct 5534 CTACCCGCACAAGGAACAAGAGTTCTGGCTGTGGCTGAATAGCTGGGCCGTTTTCCTGCA 5475 Query 44824 ATCCCCGGCAGACCTCGG--TCA-CGACGCCACCGGCTATGACCTGCCGCCGCTGGAGGT 44880 |||| |||||||| ||| |||| |||||| || ||||| |||| || Sbjct 5474 GCGCCCGAGCGACCTCGGATTCAGTGACG---ACGGCTACGATCTGCCCGCGCTCACCGT 5418 Query 44881 GTTGTGGCATGAGGT 44895 | ||||| ||||| Sbjct 5417 GCGCTGGCACGAGGT 5403 Score = 111 bits (122), Expect = 6e-20 Identities = 105/133 (79%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 47392 CTGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGA 47451 ||||||| | |||||||||||||| |||||||||||| || | ||| | | ||||| Sbjct 2884 CTGCCCCCTCCAGTTCGACATCGTCGACCGGCTGATCGAGCGATACTCTATGCGCGGCGA 2825 Query 47452 GTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTT-- 47509 | |||||||||| |||||| |||| || |||||||||||| |||| || || ||| Sbjct 2824 GCTGGTGTTCGATCCGTTCTGCGGCCTCGGCACCGTGCCGATGCGCGC---GATCCTTGC 2768 Query 47510 -GGTCGCCGCGGC 47521 |||||||||||| Sbjct 2767 CGGTCGCCGCGGC 2755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190756914379308