Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3158 84.2 2e-11 >seq3158 Length=82937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || |||||||| || ||||| || || || || || ||||||| ||| || || | || Sbjct 52389 AAAACCAAATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGGAAAGCGTACGGCCATCT 52330 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || || || || || ||||| || || ||||| || || | || | | ||||| || Sbjct 52329 TCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGAATACCTTCTTTATCT 52270 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| | | ||| | | ||| || | |||| ||| || || || | ||| || | Sbjct 52269 -TGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTCGACTTCTAACGTAATGGT 52211 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||||||| || || || ||||| ||||| Sbjct 52210 TTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429527376662153