Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3158 140 8e-28 seq599 86.0 1e-11 >seq3158 Length=82937 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || |||||||||||||| | ||||| || | | || | |||||| Sbjct 51759 AGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCT 51700 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || |||||||| | || || ||||| || ||||| || ||||||||| Sbjct 51699 TCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 51640 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || || || || || ||||| |||| ||| || ||||||||||||||| Sbjct 51639 TGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTC 51580 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || ||||| | ||| | ||||| Sbjct 51579 TTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || |||||||||||||| | ||||| || | | || | |||||| Sbjct 52161 AGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCT 52102 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || |||||||| | || || ||||| || ||||| || ||||||||| Sbjct 52101 TCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 52042 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || || || || || ||||| |||| ||| || ||||||||||||||| Sbjct 52041 TGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTC 51982 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || ||||| | ||| | ||||| Sbjct 51981 TTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51950 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||||||||| ||||| |||||||| |||| || ||||| | | ||| Sbjct 51540 CGAAGACGAAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGAGTG 51481 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| | ||||| ||||| || ||||| || Sbjct 51480 CGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGAATGCCC 51421 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || || ||||| |||||| |||||||| || || | || || |||| Sbjct 51420 TCCTTATCCTGAATCTTGGTTTTCACATTATCGATGGTATCAGAAGACTCAACCTCTAGG 51361 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 51360 GTGATGGTCTTTCCTGTCA 51342 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||||| || | || |||||| ||| || || | |||||||||| | || Sbjct 52399 ACGCAATCTCAAAACCAAATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGGAAAGCGT 52340 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 52339 ACGGCCATCTTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGAATACC 52280 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||| |||||| ||| || || ||||| ||||| | ||| || ||||| Sbjct 52279 TTCTTTATCTTGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTCGACTTCTAA 52220 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || ||||||| || || | ||| | ||||| Sbjct 52219 CGTAATGGTTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| |||||||||||||| | || || |||| || || | || || Sbjct 51227 AGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGACAGCGTGCGGCCGTCC 51168 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | ||||| ||||| || ||||| || ||||| || Sbjct 51167 TCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCCTCCTTATCC 51108 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||| || || | ||||| || | ||||| ||| Sbjct 51107 TGGATCTTGGTCTTAACATTGTCGATAGTATCGCTAGACTCCACCTCGAGAGTGATGGTC 51048 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 51047 TTTCCTGTCAAGGTCTTGACGAAAATCTGCAT 51016 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||||||||| ||||| |||||||| |||| || ||||| | | ||| Sbjct 51942 CGAAGACGAAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGAGTG 51883 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTC 225599 | || || || |||||||| ||||||||||| | ||||| ||||| Sbjct 51882 CGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTC 51836 >seq599 Length=174198 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || ||||| || || |||| || ||||| | | || | || ||| Sbjct 69523 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCCGAGAGGGTGCGGCCGTCT 69582 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| || ||||| ||||| || || || || ||||||||| Sbjct 69583 TCGAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 69642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192478012735814