Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq372 147 3e-30 seq3355 141 1e-28 >seq372 Length=11520 Score = 147 bits (162), Expect = 3e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 ||||| ||||| |||||||| ||| || ||||| | ||||||||| || | | Sbjct 9524 GACCGCACCGGCACGGGCACGCTCAGCGTCTTCGGCCACCAGATGCGGTTCGATCTGGCC 9583 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 || || || ||| || |||||||||| || | ||||| || || |||||| ||| || Sbjct 9584 GAGGGCTTCCCGGTGCTCACCACCAAGAAACTGCACCTGCGCTCGATCATCGTCGAGTTG 9643 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 ||||||||||| || ||||||||| | | | || | || ||| |||| |||| Sbjct 9644 CTGTGGTTCCTGCGCGGCGACACCAACGTGCGCTGGCTGCAGGATCGCAAGGTCAGCATC 9703 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||||||||||||||| | ||||| | ||||||||||| || ||||||||||| Sbjct 9704 TGGGACGAATGGGCGGATGAGGCGGGTGATCTCGGCCCGGTGTATGGCAAGCAATGGCG 9762 >seq3355 Length=30814 Score = 141 bits (156), Expect = 1e-28 Identities = 225/320 (70%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || ||||| || ||||| ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 8734 CTGTCGTGCCAGCTGTACCAGCGCAGTGCCGACATCTTCCTGGGCGTGCCGTTCAACATC 8675 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGA 202608 || ||||| | || |||||| | || || ||| |||| | ||||||| ||||| Sbjct 8674 GCCAGCTACGCGCTACTCACGCACATGATCGCGCAGCAGTGCGACC-TGGCGGTCGGCGA 8616 Query 202609 CTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCT 202668 |||| ||||||| || || || || | ||| |||||| | || || | || || Sbjct 8615 CTTCATCTGGACCGGCGGCGACTGCCACATCTACAGCAACCACCACGAGCAGGTGGAACT 8556 Query 202669 CCAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTC 202728 || || |||| | || | || | || | ||| ||||| || ||||| | || Sbjct 8555 GCAGCTCTCCCGCCAGCCCCATCCCTACCCCGTGCTGGACATCAAGCGCAAGCCGGCGTC 8496 Query 202729 CATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGAT 202788 |||||||||||| | ||| ||||||||||| | || ||| ||||||||||| Sbjct 8495 GATCTTCGACTACCGGTACGAGGACTTCGAGGTCCTGGACTACCAGCACCATCCGGCGAT 8436 Query 202789 TAAAGCGCCCGTCGCGATCT 202808 || |||||||| ||| ||| Sbjct 8435 CAAGGCGCCCGTGGCGGTCT 8416 Score = 136 bits (150), Expect = 6e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 201846 CCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTAC 201905 ||||||| |||||||| ||||| | | || ||||| ||||||||| || || | Sbjct 9153 CCGACCGCACCGGTACCGGCACGCGCAGCGTGTTCGGCTACCAGATGCGGTTCGACCTGA 9094 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 | || || || |||||||| |||||||| ||||| ||||| || |||||||| |||| Sbjct 9093 ACGATGGCTTCCCGCTGGTGACCACCAAGAAGGTCCACCTGAAATCCATCATCCACGAGC 9034 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 ||||||||||||| ||| | | ||| | | | || || | ||| |||| Sbjct 9033 TGCTGTGGTTCCTGGAGGGCTCGAGCGACAACAACAAGCTGCGCGAGCGCGGCGTGACCA 8974 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 ||||||||||||||||| | |||| ||| | || ||||||||||| ||| |||| Sbjct 8973 TCTGGGACGAATGGGCGCGCGAGGACGGCGACCTGGGGCCGGTGTACGGCGTGCAGTGGC 8914 Query 202086 GTAGCTGG 202093 | |||||| Sbjct 8913 GCAGCTGG 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787968912010760