Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3158 134 1e-26 seq3102 91.5 1e-13 >seq3158 Length=82937 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | || |||||| |||| || || ||||| ||||| || ||||||||||||| Sbjct 52404 CCACCACGCAATCTCAAAACCAAATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGGAA 52345 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || || || ||||| || |||||||| | ||||| ||||||| || Sbjct 52344 AGCGTACGGCCATCTTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGA 52285 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||| || || ||||| ||| || ||| | ||||| || | ||||| || Sbjct 52284 ATACCTTCTTTATCTTGAATCTTTGTCTT-AACGTTATCAATGGTATCTGACGATTCGAC 52226 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||||| || |||||||| ||||||||||||||||| ||||| Sbjct 52225 TTCTAACGTAATGGTTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| || ||||| ||||| || |||| || ||| |||| || Sbjct 51224 ACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGACAGCGTGCGGCCGTCCTCG 51165 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||| || ||||| |||| ||| | || ||||| ||| Sbjct 51164 AGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGG 51105 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || || ||| || |||||||| | || || |||| Sbjct 51104 ATCTTGGTCTTAACATTGT--CGATAGTATCGCTAGACTCCACCTCGAGAGTGATGGTCT 51047 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| || | |||||| ||||| || |||||| || Sbjct 51046 TTCCTGTCAAGGTCTTGACGAAAATCTGCATGGTG 51012 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || || || |||||||| ||||| | || ||| |||| || Sbjct 51528 ACAAGGTGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGAGTGCGGCCGTCCTCA 51469 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||||||| ||||| |||| ||| | || ||||| ||| Sbjct 51468 AGCTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGA 51409 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| |||| | | ||||| || | || || ||||| | || || |||||| Sbjct 51408 ATCTTGGTTTTCACATTATCGATGGTATCAGAAGACTCAACCTCTAGGGTGATGGTCTTT 51349 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || || |||||||| |||| Sbjct 51348 CCTGTCAGGGTCTTGACGA 51330 >seq3102 Length=369104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||| |||||| | || |||| || |||||||| |||||||| | Sbjct 110034 CCTTTTGGATGTTATAATCGCTCAAAGTACGACCGTCTTCGAGCTGCTTTCCGGCAAAAA 110093 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT----CAAT 44263 |||| |||||||| || | || | || ||||| ||| |||| ||||| || | Sbjct 110094 TCAATCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCT--TGCTTTTCACATT 110151 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || |||||| || || ||||| | || || ||||| || || |||||||| Sbjct 110152 GT--CGATTGTGTCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTG 110209 Query 44324 ACGAAG 44329 |||||| Sbjct 110210 ACGAAG 110215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359975127519777