Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3158 156 1e-32 seq3102 122 2e-22 seq599 102 2e-16 >seq3158 Length=82937 Score = 156 bits (172), Expect = 1e-32 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || |||||||| || |||||||| ||||| || || || ||||||| Sbjct 51330 TCGTCAAGACCCTGACAGGAAAGACCATCACCCTAGAGGTTGAGTCTTCTGATACCATCG 51389 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || ||| ||||||||||| || || || || ||||| ||||||||||| | | Sbjct 51390 ATAATGTGAAAACCAAGATTCAGGATAAGGAGGGCATTCCTCCAGACCAGCAACGTTTGA 51449 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || || || | |||||| | ||||||||| |||| |||| Sbjct 51450 TCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCGGATTATAACATCCAGAAAG 51509 Query 178111 AATCAACACTGCATCTTGT 178129 ||||||| || || ||||| Sbjct 51510 AATCAACTCTTCACCTTGT 51528 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || || || |||||||| | || || ||| ||| ||| Sbjct 51551 CAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCCGAC 51610 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || ||||| ||||| || ||||| || || |||||||| Sbjct 51611 ACAATTGACAACGTAAAAACGAAAATTCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 51670 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| || |||||||| |||| || | || || ||| | Sbjct 51671 CGGTTGATCTTCGCCGGCAAACAACTTGAAGATGGTCGGACGCTCTCTGACTACAACATT 51730 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| ||||| |||||||| Sbjct 51731 CAAAAAGAATCCACACTACATCTTGT 51756 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || || || |||||||| | || || ||| ||| ||| Sbjct 51953 CAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCCGAC 52012 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || ||||| ||||| || ||||| || || |||||||| Sbjct 52013 ACAATTGACAACGTAAAAACGAAAATTCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 52072 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| || |||||||| |||| || | || || ||| | Sbjct 52073 CGGTTGATCTTCGCCGGCAAACAACTTGAAGATGGTCGGACGCTCTCTGACTACAACATT 52132 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| ||||| |||||||| Sbjct 52133 CAAAAAGAATCCACACTACATCTTGT 52158 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || |||||||| || || | || || ||| ||||| Sbjct 52181 CAGATCTTCGTGAAGACCCTGACGGGAAAAACCATTACGTTAGAAGTCGAATCGTCAGAT 52240 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||| || |||||||| || || || || || || Sbjct 52241 ACCATTGATAACGTTAAGACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAACAG 52300 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || ||||| || ||||||||||| | || ||| ||||||| ||| | Sbjct 52301 CGACTCATCTTTGCTGGAAAGCAACTCGAAGATGGCCGTACGCTTTCCGATTACAACATT 52360 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||| || |||||| | ||||||||| Sbjct 52361 CAGAAGGAAAGCACTCTGCATTTGGTTTTGAGA 52393 Score = 125 bits (138), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || |||||||| || || | |||||||| || ||||| ||||||||||| ||| Sbjct 51019 CAGATTTTCGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTGGAGTCTAGC--- 51075 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || ||||| || || || ||||| ||||| || || || || ||||| |||||| Sbjct 51076 GATACTATCGACAATGTTAAGACCAAGATCCAGGATAAGGAGGGCATTCCTCCAGACCAG 51135 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | ||||| || || || |||||||| || || | || || |||| |||||| Sbjct 51136 CAACGCTTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCCGACTATAAC 51195 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 | ||||||||||| || || || |||| || Sbjct 51196 ATTCAAAAAGAATCCACCCTCCA-CTTGGTT 51225 Score = 86.0 bits (94), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||||| | |||||||| || || ||||| || || || | |||||| | ||| Sbjct 51836 GACCAGCAACGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCGGAT 51895 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||||| |||| ||||||||||| || || ||||| Sbjct 51896 TATAACATCCAGAAAGAATCAACTCTTCACCTTGT 51930 >seq3102 Length=369104 Score = 122 bits (134), Expect = 2e-22 Identities = 137/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986 ||||| || || || || || || || |||||||| ||||| || ||| ||||| Sbjct 110214 TTCGTCAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCGAGC---GACACA 110158 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || || ||| ||||| ||||| || || || ||||| ||||||||||| ||| Sbjct 110157 ATCGACAATGTGAAAAGCAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGCAGCGA 110098 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | || || |||||||| ||||||||||| || | ||| | |||||||||| ||||| Sbjct 110097 TTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGTACTTTGAGCGATTATAACATCCAA 110038 Query 178107 AA 178108 || Sbjct 110037 AA 110036 >seq599 Length=174198 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| || ||||||||||| || ||||||||||| |||||||||||| Sbjct 69641 GACAAGGAGGGCATCCCCCCAGACCAGCAACGTCTCATCTTCGCCGGCAAACAGCTCGAA 69582 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | || || | ||||||||| |||| || || || || || || ||||| Sbjct 69581 GACGGCCGCACCCTCTCGGATTATAACATCCAGAAGGAGTCCACCCTTCACCTTGT 69526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203677513212314