Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq15 120 6e-22 seq75 109 1e-18 seq64 96.9 7e-15 >seq15 Length=607589 Score = 120 bits (132), Expect = 6e-22 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 230389 ATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT 230448 || || || || || |||| ||| | || ||| | || || |||| ||| ||| Sbjct 330927 ATCACCGAGGCCGTCGAAATCGAGCAAGAATTCTTAACCGAGGCCCTTCCTTGTGCTCTT 330868 Query 230449 ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTT 230508 | || |||||||| || ||| || ||||||||||| || ||||| || | | Sbjct 330867 CTCGGTATGAACGCAACTCTCATGAAGCAATACATCGAATTTGTTGCCGATCGTCTGCTC 330808 Query 230509 GTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTC 230568 |||| || || ||||||| || ||||| |||| ||||| || | || |||||| | Sbjct 330807 CTTGCCCTCGGAAACGAGAAGGTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAAC 330748 Query 230569 ATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCT 230628 || || ||| || ||||||||||||||||| ||||||||| ||||||| || | | | Sbjct 330747 ATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAAAAGGCC 330688 Query 230629 GGTGTGATG 230637 ||||| ||| Sbjct 330687 GGTGTCATG 330679 >seq75 Length=245354 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 230435 TTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAG 230494 |||| ||| ||| | || |||||||| || ||| || |||||||| || || | Sbjct 39337 TTCCTTGTGCTCTTCTCGGTATGAACGCAACTCTAATGAAGCAATACATCGAGTTTGTTG 39396 Query 230495 CCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTG 230554 |||| || | || | || || || | ||||| || ||||| |||| ||||| || | Sbjct 39397 CCGATCGTCTGCTTCTCGCCCTCGGAAATGAGAAGGTCTACAAGTCTACCAACCCATTCG 39456 Query 230555 CATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTG 230614 || |||||| ||| || ||| || ||||||||||||||||| ||||||||| ||| Sbjct 39457 ACTTCATGGAGAACATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTG 39516 Query 230615 ACTATCAGAGGCCTGGTGTGATG 230637 |||| || | | | ||||| ||| Sbjct 39517 ACTACCAAAAGGCCGGTGTCATG 39539 >seq64 Length=284877 Score = 96.9 bits (106), Expect = 7e-15 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 319369 AGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 319428 |||| |||||| ||| || ||| || | ||| ||||| || | || ||||| ||| Sbjct 112517 AGGGTGTAGTAGCTCTTTGCTTCAGGCTTTTGCTTGACGAATTCAGCCAAGTTTCCTTTG 112458 Query 319429 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGG 319488 || || ||||| ||||||||| ||| || ||||| || | || || Sbjct 112457 TAGCATTTAAGCTTCTTTCCAGGTTCGTAGTGGTAGATGTCCGTGCACACTTCATCAAGA 112398 Query 319489 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGA--TCAGGTATT 319546 || ||||||||||| || ||||||| | | | || | | ||| | ||||| | Sbjct 112397 AATCCGGAGTCGTGAGAAACAATCAAACTGGTGATTTCGGTGTG--TGACTTGAGGTACT 112340 Query 319547 CAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTA 319606 | || |||| | ||||||| ||| | ||||||||| |||||||||||||| || | Sbjct 112339 CTTGCAGCCACTTGACGTTAGCTACATCCAAATGGTTGGTAGGCTCGTCAAGAAGAAGGA 112280 Query 319607 GCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAA 319666 | || |||| | ||| || | || |||||||| ||||| ||||| || || || | Sbjct 112279 CATCGGCTTTCATCAACATGGCTCTAGCCAGAGCGAGCTTCATCTTCCAACCACCAGACA 112220 Query 319667 G 319667 | Sbjct 112219 G 112219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057810256882820