Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq15 120 6e-22
seq75 109 1e-18
seq64 96.9 7e-15
>seq15
Length=607589
Score = 120 bits (132), Expect = 6e-22
Identities = 176/249 (71%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 230389 ATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT 230448
|| || || || || |||| ||| | || ||| | || || |||| ||| |||
Sbjct 330927 ATCACCGAGGCCGTCGAAATCGAGCAAGAATTCTTAACCGAGGCCCTTCCTTGTGCTCTT 330868
Query 230449 ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTT 230508
| || |||||||| || ||| || ||||||||||| || ||||| || | |
Sbjct 330867 CTCGGTATGAACGCAACTCTCATGAAGCAATACATCGAATTTGTTGCCGATCGTCTGCTC 330808
Query 230509 GTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTC 230568
|||| || || ||||||| || ||||| |||| ||||| || | || |||||| |
Sbjct 330807 CTTGCCCTCGGAAACGAGAAGGTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAAC 330748
Query 230569 ATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCT 230628
|| || ||| || ||||||||||||||||| ||||||||| ||||||| || | | |
Sbjct 330747 ATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAAAAGGCC 330688
Query 230629 GGTGTGATG 230637
||||| |||
Sbjct 330687 GGTGTCATG 330679
>seq75
Length=245354
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 230435 TTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAG 230494
|||| ||| ||| | || |||||||| || ||| || |||||||| || || |
Sbjct 39337 TTCCTTGTGCTCTTCTCGGTATGAACGCAACTCTAATGAAGCAATACATCGAGTTTGTTG 39396
Query 230495 CCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTG 230554
|||| || | || | || || || | ||||| || ||||| |||| ||||| || |
Sbjct 39397 CCGATCGTCTGCTTCTCGCCCTCGGAAATGAGAAGGTCTACAAGTCTACCAACCCATTCG 39456
Query 230555 CATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTG 230614
|| |||||| ||| || ||| || ||||||||||||||||| ||||||||| |||
Sbjct 39457 ACTTCATGGAGAACATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTG 39516
Query 230615 ACTATCAGAGGCCTGGTGTGATG 230637
|||| || | | | ||||| |||
Sbjct 39517 ACTACCAAAAGGCCGGTGTCATG 39539
>seq64
Length=284877
Score = 96.9 bits (106), Expect = 7e-15
Identities = 203/301 (67%), Gaps = 4/301 (1%)
Strand=Plus/Minus
Query 319369 AGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 319428
|||| |||||| ||| || ||| || | ||| ||||| || | || ||||| |||
Sbjct 112517 AGGGTGTAGTAGCTCTTTGCTTCAGGCTTTTGCTTGACGAATTCAGCCAAGTTTCCTTTG 112458
Query 319429 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGG 319488
|| || ||||| ||||||||| ||| || ||||| || | || ||
Sbjct 112457 TAGCATTTAAGCTTCTTTCCAGGTTCGTAGTGGTAGATGTCCGTGCACACTTCATCAAGA 112398
Query 319489 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGA--TCAGGTATT 319546
|| ||||||||||| || ||||||| | | | || | | ||| | ||||| |
Sbjct 112397 AATCCGGAGTCGTGAGAAACAATCAAACTGGTGATTTCGGTGTG--TGACTTGAGGTACT 112340
Query 319547 CAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTA 319606
| || |||| | ||||||| ||| | ||||||||| |||||||||||||| || |
Sbjct 112339 CTTGCAGCCACTTGACGTTAGCTACATCCAAATGGTTGGTAGGCTCGTCAAGAAGAAGGA 112280
Query 319607 GCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAA 319666
| || |||| | ||| || | || |||||||| ||||| ||||| || || || |
Sbjct 112279 CATCGGCTTTCATCAACATGGCTCTAGCCAGAGCGAGCTTCATCTTCCAACCACCAGACA 112220
Query 319667 G 319667
|
Sbjct 112219 G 112219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057810256882820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |