Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq7 107 2e-18
seq96 98.7 1e-15
seq59 89.7 6e-13
seq10 89.7 6e-13
>seq7
Length=756160
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009
|||||| ||||| | | |||||| ||||| |||| |||||||||||||| || |||||
Sbjct 415891 CTATTGGCCTCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTA 415832
Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
||| || || || | || ||||| |||||||||||||| || | ||| ||||||||
Sbjct 415831 ATCGCTCAAGGTGCGACCATCCTCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGGTC 415772
Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129
| || | || ||||| ||| ||| || || | | | | ||||| ||
Sbjct 415771 CGGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGA 415712
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || | ||||| || || || || | ||||| || ||||| |||||
Sbjct 415711 CTCAACTTCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 415658
Score = 86.0 bits (94), Expect = 7e-12
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
|||||||| || ||||| || | || || || | || || || ||||| ||||||||
Sbjct 415620 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGTTGCTTGCCAGCGAAA 415561
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
||||| || || || || | || | || ||||| || ||| | |||| ||||| |||
Sbjct 415560 ATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCT-TGAATCTTTGATTTGA-CGT 415503
Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||| || |||||||| || | || || || ||||| || || ||||| |
Sbjct 415502 TGTCGATCGTATCCGAGGATTCCACTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGA 415443
Query 43171 CAAAGATTTGCAT 43183
| |||||||||||
Sbjct 415442 CGAAGATTTGCAT 415430
>seq96
Length=182788
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009
|||||| || || | | |||||| ||||| |||| |||||||||||||| || |||||
Sbjct 166898 CTATTGGCCGCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTA 166839
Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
||| || || || | || || | |||||||||||| || || | ||||||||||||
Sbjct 166838 ATCGCTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTC 166779
Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129
| || | || ||||| ||| ||| || || | | | | ||||| ||
Sbjct 166778 CGGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGA 166719
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || | ||||| || || || || | ||||| || ||||| |||||
Sbjct 166718 CTCAACTTCTAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665
Score = 86.0 bits (94), Expect = 7e-12
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
|||||||| || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 166627 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGCTGCTTGCCAGCAAAA 166568
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
||||| || || || || | || | || ||||| || ||| | |||| ||||| |||
Sbjct 166567 ATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCT-TGAATCTTTGATTTGA-CGT 166510
Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||| || || ||||| || | ||||| || ||||| || || ||||| |
Sbjct 166509 TGTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGA 166450
Query 43171 CAAAGATTTGCAT 43183
| |||||||||||
Sbjct 166449 CGAAGATTTGCAT 166437
>seq59
Length=321881
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||||| || |||| || || ||||| || ||||| |
Sbjct 265768 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 265827
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| || ||||||||||| | || | | |||||||||| ||| || ||||| |
Sbjct 265828 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 265887
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | |||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 265888 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 265947
Query 43174 AG 43175
||
Sbjct 265948 AG 265949
>seq10
Length=717553
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||||| || |||| || || ||||| || ||||| |
Sbjct 20116 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 20057
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| || ||||||||||| | || | | |||||||||| ||| || ||||| |
Sbjct 20056 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 19997
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | |||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 19996 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 19937
Query 43174 AG 43175
||
Sbjct 19936 AG 19935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571810352211920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |