Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 seq96 89.7 4e-13 seq59 86.0 5e-12 seq10 86.0 5e-12 >seq7 Length=756160 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||||||||| ||||||||||| || |||||||| ||| ||| |||| | || Sbjct 415869 AAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCATCC 415810 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| || || ||||| ||||| || || ||||| || || | || ||||| ||| Sbjct 415809 TCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGGTCCGGTGGGATGCCTTCCTTATCC 415750 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| ||| || | || || Sbjct 415410 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCG 415351 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| |||| || ||||| || ||||| | |||||||||||| Sbjct 415350 AGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGAGGGATACCCTCCTTGTCTTGG 415291 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | || ||||| | ||| || |||||| Sbjct 415290 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGATTCGACCTCGAGGGTGATGGTCTTG 415231 Query 45308 CCCGTCAGAGTCTTCACAA 45326 || || || ||||| |||| Sbjct 415230 CCGGTGAGGGTCTTGACAA 415212 >seq96 Length=182788 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||||||||| ||||||||||| || |||||||| ||| ||| |||| | || Sbjct 166876 AAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCATCC 166817 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || ||||| ||||| ||||| || || | || ||||| ||| Sbjct 166816 TCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTATCC 166757 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | |||| ||| || || | || || ||| Sbjct 166756 TGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAACTTCTAATGTGATTGTC 166697 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||| || ||||| ||||| Sbjct 166696 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665 >seq59 Length=321881 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || |||| |||| || ||||| ||||||||||| | Sbjct 265768 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 265827 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| || || || || Sbjct 265828 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 265887 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||| ||| ||||| | ||| || ||||||||||| || ||||| || | Sbjct 265888 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 265947 Query 45327 AG 45328 || Sbjct 265948 AG 265949 >seq10 Length=717553 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || |||| |||| || ||||| ||||||||||| | Sbjct 20116 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 20057 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| || || || || Sbjct 20056 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 19997 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||| ||| ||||| | ||| || ||||||||||| || ||||| || | Sbjct 19996 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 19937 Query 45327 AG 45328 || Sbjct 19936 AG 19935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070317611294