Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq75 93.3 3e-14 seq15 93.3 3e-14 >seq75 Length=245354 Score = 93.3 bits (102), Expect = 3e-14 Identities = 291/446 (65%), Gaps = 10/446 (2%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 ||||||| |||| ||||| || || ||||| || | || ||| || |||||| | || Sbjct 39083 ACGTCTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGGTTCCTTTGCGTCTAT 39142 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||| ||||||| || || ||||| || | | || || ||||||||||| Sbjct 39143 TTTCTGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCTCAAACGAGTTGATCTC 39202 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 ||||| || || || ||| ||||||||||| | || || ||| || || | Sbjct 39203 GCGTGATGAGGGCCTTCACACCGACTTTGCTTGCCTTCTCTTCTCGCACTTG--AAGC-- 39258 Query 22920 ACCGTGTCAGGACGATGCACATCAAA----TCATATCTGATGCCGTTGACATTGAGACGG 22975 ||||| || | | | | || || | || | || ||||| | || ||| | Sbjct 39259 ACCGTCCAAGCAAGCAGGCCGTCCAAGATGTTATCACCGAGGCCGTCCAAATCGAGCAAG 39318 Query 22976 CTTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGT-ATGAGA 23034 ||||| ||||| || | || || |||||||| | || | |||| Sbjct 39319 AATTCTTAACCGAGGCCCTTCCTTGTGCTCTTCTCGGTATGAA-CGCAACTCTAATGAAG 39377 Query 23035 CTGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTAT 23094 | ||||| |||||||||| ||||| ||||| ||||| || ||| ||| | || Sbjct 39378 CAATACATCGAGTTTGTTGCCGATCGTCTGCTTCTCGCCCTCGGAAATGAGAAGGTCTAC 39437 Query 23095 AACGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTC 23154 || | |||| ||||| || |||||||| ||||| | ||| || || || |||||| Sbjct 39438 AAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCTGGCAAGACCAACTTC 39497 Query 23155 TTTGAACGCCGTGTGAGTGAATATCA 23180 || || ||||| |||| || || Sbjct 39498 TTCGAGAAGCGTGTCGGTGACTACCA 39523 >seq15 Length=607589 Score = 93.3 bits (102), Expect = 3e-14 Identities = 291/446 (65%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 ||||||| |||| ||||| || || ||||| || | || ||| || |||||| | || Sbjct 331135 ACGTCTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGGTTCCTTTGCGTCTAT 331076 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||| ||||||| || || ||||| || | | || || ||||||||||| Sbjct 331075 TTTCTGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCTCAAACGAGTTGATCTC 331016 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 ||||| || || || ||| ||||||||||| | || || ||| || || | Sbjct 331015 GCGTGATGAGGGCCTTCACACCGACTTTGCTTGCCTTCTCTTCTCGCACTTG--AAGC-- 330960 Query 22920 ACCGTGTCAGGACGATGCACATCAAA----TCATATCTGATGCCGTTGACATTGAGACGG 22975 |||| || | | | | || || | || | || ||||| || || ||| | Sbjct 330959 ACCGCCCAAGCAAGCAGGCCGTCCAAGCTGTTATCACCGAGGCCGTCGAAATCGAGCAAG 330900 Query 22976 CTTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGT-ATGAGA 23034 ||||| ||||| || | || || |||||||| | || | |||| Sbjct 330899 AATTCTTAACCGAGGCCCTTCCTTGTGCTCTTCTCGGTATGAA-CGCAACTCTCATGAAG 330841 Query 23035 CTGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTAT 23094 | ||||| | |||||||| ||||| |||||| |||||| || | | ||| | || Sbjct 330840 CAATACATCGAATTTGTTGCCGATCGTCTGCTCCTTGCCCTCGGAAACGAGAAGGTCTAC 330781 Query 23095 AACGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTC 23154 || | |||| ||||| || |||||||| ||||| | ||| || || || |||||| Sbjct 330780 AAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCTGGCAAGACCAACTTC 330721 Query 23155 TTTGAACGCCGTGTGAGTGAATATCA 23180 || || ||||| |||| || || Sbjct 330720 TTCGAGAAGCGTGTCGGTGACTACCA 330695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356229197620642