Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq96 111 2e-19
seq102 104 2e-17
seq38 104 2e-17
seq7 98.7 1e-15
>seq96
Length=182788
Score = 111 bits (122), Expect = 2e-19
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||||||||| | ||||| || ||||| ||||| || ||| |
Sbjct 166663 CCACCACGAAGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 166604
Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| || |||| || |||||||| || |||||| | || |||||||| ||||| || |
Sbjct 166603 AAGGT--TCGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGG 166546
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCC 139714
| |||||||| || || ||| | |||| ||| | | || | || || | || ||||
Sbjct 166545 GAATGCCTTCCTTATCT-TGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCC 166487
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || | || | ||||||||||| | || || ||||| |||||||||
Sbjct 166486 ACTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 166436
>seq102
Length=175646
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || | ||||| || ||||| || || ||||| ||||||
Sbjct 56138 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 56197
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||||||| || || || || ||||||| |||||||| ||||| ||
Sbjct 56198 AGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 56257
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || ||| | | || | ||||| | | |||||||
Sbjct 56258 ATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACC 56317
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| ||| | |||||||| || | || || ||||| || |||||
Sbjct 56318 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 56364
>seq38
Length=423541
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || | ||||| || ||||| || || ||||| ||||||
Sbjct 319950 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 320009
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||||||| || || || || ||||||| |||||||| ||||| ||
Sbjct 320010 AGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 320069
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || ||| | | || | ||||| | | |||||||
Sbjct 320070 ATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACC 320129
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| ||| | |||||||| || | || || ||||| || |||||
Sbjct 320130 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 320176
>seq7
Length=756160
Score = 98.7 bits (108), Expect = 1e-15
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||||||||| | ||||| || ||||| ||||| || ||| |
Sbjct 415656 CCACCACGAAGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 415597
Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| || |||| || ||||| || || ||||| | || |||||||| ||||| || |
Sbjct 415596 AAGGT--TCGACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGG 415539
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCC 139714
| |||||||| || || ||| | |||| ||| | | || | || || | || |||
Sbjct 415538 GAATGCCTTCCTTATCT-TGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCC 415480
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || | || | ||||||||||| | || || ||||| |||||||||
Sbjct 415479 ACTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 415429
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | ||| | || | ||| | |||||||| || || ||||| || ||
Sbjct 415144 CCGCCACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 415085
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| || || || || || || |||||||||||||||| ||||||||
Sbjct 415084 AGAGTGCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCGGGAGGA 415025
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || ||||| ||| || || | | || | ||||||| || || |||
Sbjct 415024 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGATTCAACC 414965
Query 139718 TCAACGGTCACCGTCTTGCCGGT 139740
|||| || | |||||||||||
Sbjct 414964 TCAAGAGTGATGGTCTTGCCGGT 414942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496057712388800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |