Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq96 100 2e-16 seq7 87.8 1e-12 >seq96 Length=182788 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || ||||| || | ||||||||||||||| | ||||||||| Sbjct 166892 GCCGCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCT 166833 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || ||||| || || || ||||| ||||||||||| || || | || Sbjct 166832 CAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGTGG 166773 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || || || ||| |||||| | ||| || Sbjct 166772 GATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAAC 166713 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| || | ||| || || || || ||||| Sbjct 166712 TTCTAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665 >seq7 Length=756160 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || ||||| || | ||||||||||||||| | ||||||||| Sbjct 415885 GCCTCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCT 415826 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | ||| || || || || |||||||| || || || | || Sbjct 415825 CAAGGTGCGACCATCCTCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGGTCCGGTGG 415766 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || || || ||| |||||| | ||| || Sbjct 415765 GATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAAC 415706 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| || | || || || || || ||||| Sbjct 415705 TTCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 415658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381364886986812