Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 100 4e-16 seq75 98.7 1e-15 >seq15 Length=607589 Score = 100 bits (110), Expect = 4e-16 Identities = 285/437 (65%), Gaps = 6/437 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||||| ||||| || ||||| || || ||||| || | | || || || Sbjct 330692 TTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATGTTC 330751 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || || |||||| || || | || | ||| | || | | Sbjct 330752 TCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCGTTTCCGAGGGCAAGGAGC 330811 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCTATA 41950 | | ||| || | ||||| || ||| ||||| | || | ||||| || | | Sbjct 330812 AGACGATCGGCAACAAATTCGATGTATTGCTTCATGAGAGTTGCG---TTCATACCGAGA 330868 Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 || | ||||| ||| | || | |||||||| || || ||| || || || ||| Sbjct 330869 AGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTCGACGGCCTCGGTGATA 330928 Query 42011 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 | || | || | | | || || | | | || || || | | || || Sbjct 330929 ACAGCTTGGACGGCCTGCTTGCTTGGGCGGTGCTTCAAGTGCGAGAAGAGAAGGCAAGCA 330988 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || ||| ||| || |||||||| | || || ||||| || || |||||||||||| Sbjct 330989 AAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAGTCCGGGC 331048 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 || || || ||||| || | ||| || ||||||||||| || ||| || ||||| ||| Sbjct 331049 ATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAAGATACCT 331108 Query 42191 TCTACTGCCGCAAAGGC 42207 || || || ||||| || Sbjct 331109 TCGACCGCAGCAAATGC 331125 >seq75 Length=245354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 287/439 (65%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||||| ||||| || ||||| || || ||||| || | | || || || Sbjct 39526 TTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATGTTC 39467 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || || |||||| || || | || | | ||| | | || | Sbjct 39466 TCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCATTTCCGAGGGCGAGAAGC 39407 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCTATA 41950 | | ||| || | || || || ||| ||||| | || | ||||| || | | Sbjct 39406 AGACGATCGGCAACAAACTCGATGTATTGCTTCATTAGAGTTGCG---TTCATACCGAGA 39350 Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 || | ||||| ||| | || | |||||||| || || ||| || || || ||| Sbjct 39349 AGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTGGACGGCCTCGGTGATA 39290 Query 42011 ATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 42068 | | |||| || | | | || || | | | || || || | | || | Sbjct 39289 ACA--TCTTGGACGGCCTGCTTGCTTGGACGGTGCTTCAAGTGCGAGAAGAGAAGGCAAG 39232 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 | || ||| ||| || |||||||| | || || ||||| || || |||||||||| Sbjct 39231 CAAAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAGTCCGG 39172 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188 |||| || || ||||| || | ||| || ||||||||||| || ||| || ||||| | Sbjct 39171 GCATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAAGATAC 39112 Query 42189 CTTCTACTGCCGCAAAGGC 42207 |||| || || ||||| || Sbjct 39111 CTTCGACCGCAGCAAATGC 39093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130693310640