Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq15 100 4e-16
seq75 98.7 1e-15
>seq15
Length=607589
Score = 100 bits (110), Expect = 4e-16
Identities = 285/437 (65%), Gaps = 6/437 (1%)
Strand=Plus/Plus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||||| ||||| || ||||| || || ||||| || | | || || ||
Sbjct 330692 TTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATGTTC 330751
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
|||||||| || || || |||||| || || | || | ||| | || | |
Sbjct 330752 TCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCGTTTCCGAGGGCAAGGAGC 330811
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCTATA 41950
| | ||| || | ||||| || ||| ||||| | || | ||||| || | |
Sbjct 330812 AGACGATCGGCAACAAATTCGATGTATTGCTTCATGAGAGTTGCG---TTCATACCGAGA 330868
Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010
|| | ||||| ||| | || | |||||||| || || ||| || || || |||
Sbjct 330869 AGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTCGACGGCCTCGGTGATA 330928
Query 42011 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070
| || | || | | | || || | | | || || || | | || ||
Sbjct 330929 ACAGCTTGGACGGCCTGCTTGCTTGGGCGGTGCTTCAAGTGCGAGAAGAGAAGGCAAGCA 330988
Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130
|| ||| ||| || |||||||| | || || ||||| || || ||||||||||||
Sbjct 330989 AAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAGTCCGGGC 331048
Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190
|| || || ||||| || | ||| || ||||||||||| || ||| || ||||| |||
Sbjct 331049 ATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAAGATACCT 331108
Query 42191 TCTACTGCCGCAAAGGC 42207
|| || || ||||| ||
Sbjct 331109 TCGACCGCAGCAAATGC 331125
>seq75
Length=245354
Score = 98.7 bits (108), Expect = 1e-15
Identities = 287/439 (65%), Gaps = 10/439 (2%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||||| ||||| || ||||| || || ||||| || | | || || ||
Sbjct 39526 TTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATGTTC 39467
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
|||||||| || || || |||||| || || | || | | ||| | | || |
Sbjct 39466 TCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCATTTCCGAGGGCGAGAAGC 39407
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCTATA 41950
| | ||| || | || || || ||| ||||| | || | ||||| || | |
Sbjct 39406 AGACGATCGGCAACAAACTCGATGTATTGCTTCATTAGAGTTGCG---TTCATACCGAGA 39350
Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010
|| | ||||| ||| | || | |||||||| || || ||| || || || |||
Sbjct 39349 AGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTGGACGGCCTCGGTGATA 39290
Query 42011 ATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 42068
| | |||| || | | | || || | | | || || || | | || |
Sbjct 39289 ACA--TCTTGGACGGCCTGCTTGCTTGGACGGTGCTTCAAGTGCGAGAAGAGAAGGCAAG 39232
Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128
| || ||| ||| || |||||||| | || || ||||| || || ||||||||||
Sbjct 39231 CAAAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAGTCCGG 39172
Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188
|||| || || ||||| || | ||| || ||||||||||| || ||| || ||||| |
Sbjct 39171 GCATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAAGATAC 39112
Query 42189 CTTCTACTGCCGCAAAGGC 42207
|||| || || ||||| ||
Sbjct 39111 CTTCGACCGCAGCAAATGC 39093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671130693310640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |