Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7 122 9e-23 seq96 116 4e-21 seq102 86.0 6e-12 seq38 86.0 6e-12 seq75 84.2 2e-11 seq15 84.2 2e-11 >seq7 Length=756160 Score = 122 bits (134), Expect = 9e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | |||||| || | |||||||| ||||| |||||||| ||| | Sbjct 415656 CCACCACGAAGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 415597 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| || |||||||| || ||||| | || |||||||| ||||| || | Sbjct 415596 AAGGT--TCGACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGG 415539 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||| || || ||| ||| ||| | | || | ||| |||| || ||| | Sbjct 415538 GAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCCA 415479 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | ||||||||||| | || || ||||| ||||||||| Sbjct 415478 CTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 415429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 |||||||| || | |||||| || || || | || || ||||| |||||||||||| Sbjct 415887 TGGCCTCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCG 415828 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 |||| |||| || || ||||| |||||||| |||||| |||||||| || || Sbjct 415827 CTCAAGGTGCGACCATCCTCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGGTCCGGT 415768 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| || || || || || | | || | ||||| | | || Sbjct 415767 GGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCA 415708 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || | ||||| || ||||| || || ||||| || |||||| Sbjct 415707 ACTTCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCATA 415657 >seq96 Length=182788 Score = 116 bits (128), Expect = 4e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | |||||| || | |||||||| ||||| |||||||| ||| | Sbjct 166663 CCACCACGAAGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 166604 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| || ||||| || || |||||| | || |||||||| ||||| || | Sbjct 166603 AAGGT--TCGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGG 166546 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||| || || ||| ||| ||| | | || | ||| |||| || || | Sbjct 166545 GAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCA 166486 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | ||||||||||| | || || ||||| ||||||||| Sbjct 166485 CTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 166436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | |||||| || || || | || || ||||| |||||||||||| Sbjct 166894 TGGCCGCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCG 166835 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 |||| |||| || || | || ||||||||| |||||| || ||||| || || Sbjct 166834 CTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGT 166775 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| || || || || || | | || | ||||| | | || Sbjct 166774 GGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCA 166715 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || | ||||| || ||||| || || ||||| || |||||| Sbjct 166714 ACTTCTAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 166664 >seq102 Length=175646 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | |||| || || || || || |||||||||||| Sbjct 56138 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 56197 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||||||| || || || ||||||| |||||||| ||||| || Sbjct 56198 AGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 56257 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | || || Sbjct 56258 ATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACC 56317 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| || | || || ||||| || ||||| Sbjct 56318 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 56364 >seq38 Length=423541 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | |||| || || || || || |||||||||||| Sbjct 319950 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 320009 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||||||| || || || ||||||| |||||||| ||||| || Sbjct 320010 AGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 320069 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | || || Sbjct 320070 ATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACC 320129 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| || | || || ||||| || ||||| Sbjct 320130 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 320176 >seq75 Length=245354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGT 50418 || |||| ||| |||||| | | ||||| | | |||| || ||| || ||| ||||| Sbjct 39027 AAGAAGGCCGACTGGGCAGTCAGATGGATTCAGGACAAGAACTCTACCTTCGCCCAACGT 39086 Query 50419 TTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTT 50478 | ||||| ||||| || |||||| | ||||| ||| |||||| | || || Sbjct 39087 CTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGGTTCCTTTGCGTCTATTTTC 39146 Query 50479 TACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGC 50538 | | || | ||| | |||||||| ||||| || ||||||||||| ||||| Sbjct 39147 TGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCTCAAACGAGTTGATCTCGCGT 39206 Query 50539 GACGAAGGAATGCACACAGACTTTGCGTG 50567 || || || | ||||| |||||||| || Sbjct 39207 GATGAGGGCCTTCACACCGACTTTGCTTG 39235 >seq15 Length=607589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGT 50418 || |||| ||| |||||| | | ||||| | | |||| || ||| || ||| ||||| Sbjct 331191 AAGAAGGCCGACTGGGCAGTCAGATGGATTCAGGACAAGAACTCTACCTTCGCCCAACGT 331132 Query 50419 TTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTT 50478 | ||||| ||||| || |||||| | ||||| ||| |||||| | || || Sbjct 331131 CTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGGTTCCTTTGCGTCTATTTTC 331072 Query 50479 TACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGC 50538 | | || | ||| | |||||||| ||||| || ||||||||||| ||||| Sbjct 331071 TGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCTCAAACGAGTTGATCTCGCGT 331012 Query 50539 GACGAAGGAATGCACACAGACTTTGCGTG 50567 || || || | ||||| |||||||| || Sbjct 331011 GATGAGGGCCTTCACACCGACTTTGCTTG 330983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507007973592480