Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq7 122 9e-23
seq96 116 4e-21
seq102 86.0 6e-12
seq38 86.0 6e-12
seq75 84.2 2e-11
seq15 84.2 2e-11
>seq7
Length=756160
Score = 122 bits (134), Expect = 9e-23
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | |||||| || | |||||||| ||||| |||||||| ||| |
Sbjct 415656 CCACCACGAAGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 415597
Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| || |||| || |||||||| || ||||| | || |||||||| ||||| || |
Sbjct 415596 AAGGT--TCGACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGG 415539
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| |||||||| || || ||| ||| ||| | | || | ||| |||| || ||| |
Sbjct 415538 GAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCCA 415479
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||| | || | ||||||||||| | || || ||||| |||||||||
Sbjct 415478 CTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 415429
Score = 96.9 bits (106), Expect = 4e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
|||||||| || | |||||| || || || | || || ||||| ||||||||||||
Sbjct 415887 TGGCCTCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCG 415828
Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074
|||| |||| || || ||||| |||||||| |||||| |||||||| || ||
Sbjct 415827 CTCAAGGTGCGACCATCCTCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGGTCCGGT 415768
Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134
|| |||||||| || || || || || | | || | ||||| | | ||
Sbjct 415767 GGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCA 415708
Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||||| | || | ||||| || ||||| || || ||||| || ||||||
Sbjct 415707 ACTTCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCATA 415657
>seq96
Length=182788
Score = 116 bits (128), Expect = 4e-21
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | |||||| || | |||||||| ||||| |||||||| ||| |
Sbjct 166663 CCACCACGAAGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 166604
Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| || |||| || ||||| || || |||||| | || |||||||| ||||| || |
Sbjct 166603 AAGGT--TCGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGG 166546
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| |||||||| || || ||| ||| ||| | | || | ||| |||| || || |
Sbjct 166545 GAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCA 166486
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||| | || | ||||||||||| | || || ||||| |||||||||
Sbjct 166485 CTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 166436
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
||||| || || | |||||| || || || | || || ||||| ||||||||||||
Sbjct 166894 TGGCCGCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCG 166835
Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074
|||| |||| || || | || ||||||||| |||||| || ||||| || ||
Sbjct 166834 CTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGT 166775
Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134
|| |||||||| || || || || || | | || | ||||| | | ||
Sbjct 166774 GGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCA 166715
Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||||| | || | ||||| || ||||| || || ||||| || ||||||
Sbjct 166714 ACTTCTAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 166664
>seq102
Length=175646
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | ||| | || | |||| || || || || || ||||||||||||
Sbjct 56138 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 56197
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| |||||||||||| || || || ||||||| |||||||| ||||| ||
Sbjct 56198 AGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 56257
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| || || ||| | | || | ||||| | | || ||
Sbjct 56258 ATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACC 56317
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | |||||||| || | || || ||||| || |||||
Sbjct 56318 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 56364
>seq38
Length=423541
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | ||| | || | |||| || || || || || ||||||||||||
Sbjct 319950 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 320009
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| |||||||||||| || || || ||||||| |||||||| ||||| ||
Sbjct 320010 AGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 320069
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| || || ||| | | || | ||||| | | || ||
Sbjct 320070 ATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACC 320129
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | |||||||| || | || || ||||| || |||||
Sbjct 320130 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 320176
>seq75
Length=245354
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGT 50418
|| |||| ||| |||||| | | ||||| | | |||| || ||| || ||| |||||
Sbjct 39027 AAGAAGGCCGACTGGGCAGTCAGATGGATTCAGGACAAGAACTCTACCTTCGCCCAACGT 39086
Query 50419 TTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTT 50478
| ||||| ||||| || |||||| | ||||| ||| |||||| | || ||
Sbjct 39087 CTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGGTTCCTTTGCGTCTATTTTC 39146
Query 50479 TACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGC 50538
| | || | ||| | |||||||| ||||| || ||||||||||| |||||
Sbjct 39147 TGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCTCAAACGAGTTGATCTCGCGT 39206
Query 50539 GACGAAGGAATGCACACAGACTTTGCGTG 50567
|| || || | ||||| |||||||| ||
Sbjct 39207 GATGAGGGCCTTCACACCGACTTTGCTTG 39235
>seq15
Length=607589
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGT 50418
|| |||| ||| |||||| | | ||||| | | |||| || ||| || ||| |||||
Sbjct 331191 AAGAAGGCCGACTGGGCAGTCAGATGGATTCAGGACAAGAACTCTACCTTCGCCCAACGT 331132
Query 50419 TTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTT 50478
| ||||| ||||| || |||||| | ||||| ||| |||||| | || ||
Sbjct 331131 CTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGGTTCCTTTGCGTCTATTTTC 331072
Query 50479 TACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGC 50538
| | || | ||| | |||||||| ||||| || ||||||||||| |||||
Sbjct 331071 TGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCTCAAACGAGTTGATCTCGCGT 331012
Query 50539 GACGAAGGAATGCACACAGACTTTGCGTG 50567
|| || || | ||||| |||||||| ||
Sbjct 331011 GATGAGGGCCTTCACACCGACTTTGCTTG 330983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507007973592480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |