Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15 122 1e-22 seq75 120 5e-22 >seq15 Length=607589 Score = 122 bits (134), Expect = 1e-22 Identities = 211/295 (72%), Gaps = 14/295 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||| | |||||| | ||||| Sbjct 331592 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCCGAAGAAATTGATCTC 331533 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTT--TATAT 125136 ||||||||||| |||||||| | | | | || || ||| ||| ||| | || Sbjct 331532 TCCAAGGACCTTCACGATTGGAACAACAGACTCACCGA---TGA-CGAACGTTACTTCAT 331477 Query 125137 CGCACATTT--TGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGA 125193 | ||||| | | || ||||| || | || |||||||| |||||||| || | ||| || Sbjct 331476 CTCACATGTCCTCGCATTCTTCGCAGCATCTGATGGAATTGTCAACGAGAACCTTGTCGA 331417 Query 125194 CACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAAT 125251 || ||| | | |||| | ||||| |||| ||| ||||| ||||| |||||||| Sbjct 331416 -GCGCTTCAGTGGTGAAGTTCA-AATTCCTGAGG-CTCGATGCTTCTACGGTTTCCAAAT 331360 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 |||||| |||||| | ||||| || | |||||| || || |||| || ||| Sbjct 331359 CATGATGGAGAACATCCACTCCGAGACCTACTCTCTCCTCATCGACACCTATATT 331305 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| | || ||| | | |||| | | || |||||||| || || || || Sbjct 331167 TGGATTCAGGACAAGAACTCTACCTTCGCCCAACGTCTCGTGGCATTTGCTGCGGTCGAA 331108 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || ||||| || ||| |||||| | || || ||| | |||||||| || || ||| Sbjct 331107 GGTATCTTTTTCAGTGGTTCCTTTGCGTCTATTTTCTGGTTGAAGAAGCGAGGTCTGATG 331048 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 |||||||| || | |||||||| || || || || |||||||| ||| |||||| Sbjct 331047 CCCGGACTCACCTTCTCAAACGAGTTGATCTCGCGTGATGAGGGCCTTCACACCGACTTT 330988 Query 125571 GC 125572 || Sbjct 330987 GC 330986 >seq75 Length=245354 Score = 120 bits (132), Expect = 5e-22 Identities = 206/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||| | |||||| | ||||| Sbjct 38634 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCCGAAGAAATTGATCTC 38693 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||||||| | | | | | || ||||| | || || || Sbjct 38694 TCCAAGGACCTTCACGATTGGAACAACAGACTCAACGACGACGAGCGTTACTTCATCTCA 38753 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 || | | || ||||| || | || |||||||| |||||||| || | ||| || || Sbjct 38754 CATGTCCTCGCATTCTTCGCAGCATCTGATGGAATTGTCAACGAGAACCTTGTCGA-GCG 38812 Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||| | | |||| | ||||| |||| ||| ||||| ||||| |||||||||||| Sbjct 38813 CTTCAGTGGTGAAGTTCA-AATTCCTGAGG-CTCGATGCTTCTACGGTTTCCAAATCATG 38870 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 || |||||| | ||||| || | |||||| || || |||| || ||| Sbjct 38871 ATGGAGAACATCCACTCTGAGACCTACTCTCTCCTCATCGACACCTATATT 38921 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| | || ||| | | |||| | | || |||||||| || || || || Sbjct 39051 TGGATTCAGGACAAGAACTCTACCTTCGCCCAACGTCTCGTGGCATTTGCTGCGGTCGAA 39110 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || ||||| || ||| |||||| | || || ||| | |||||||| || || ||| Sbjct 39111 GGTATCTTTTTCAGTGGTTCCTTTGCGTCTATTTTCTGGTTGAAGAAGCGAGGTCTGATG 39170 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 |||||||| || | |||||||| || || || || |||||||| ||| |||||| Sbjct 39171 CCCGGACTCACCTTCTCAAACGAGTTGATCTCGCGTGATGAGGGCCTTCACACCGACTTT 39230 Query 125571 GC 125572 || Sbjct 39231 GC 39232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049807074640