Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq26 113 7e-21 seq67 111 2e-20 seq44 107 3e-19 seq58 95.1 2e-15 >seq26 Length=491941 Score = 113 bits (124), Expect = 7e-21 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| ||| |||||| || |||||||| || ||||| ||||| || || Sbjct 237490 GCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACGAAGCCTGCGAT 237432 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| |||||||||||||| || |||||| |||||| Sbjct 237431 CCGTCGTCTTGCTCGTCGTGGTGGTGTGAAGCGTATCTCTG 237391 >seq67 Length=274343 Score = 111 bits (122), Expect = 2e-20 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| ||||| |||| | |||| |||||| || || |||| ||||| Sbjct 84042 TGATCTACGAGGAGACTCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATCCGTGATG 84101 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||| ||||| || || ||||||||||||||| | ||| | ||||| | Sbjct 84102 CCGTCACCTACACCGAACACGCCAAGCGCAAGACTGTCACCTCCCTCGATGTTGTCTACG 84161 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||||||||||| | || ||||| || ||||| Sbjct 84162 CTCTCAAGCGTCAAGGCCGTACCCTCTACGGTTTCGGTGGTTAA 84205 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 83878 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 83936 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| |||||||||||||| ||||||||| |||| Sbjct 83937 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 83975 >seq44 Length=385716 Score = 107 bits (118), Expect = 3e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| ||||| |||| | |||| |||||| || || |||| ||||| Sbjct 197090 TGATCTACGAGGAGACTCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATCCGTGATG 197149 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||| ||||| || || ||||| ||||||||| | ||| | ||||| | Sbjct 197150 CCGTCACCTACACCGAACACGCCAAGCGCAAGACCGTCACCTCCCTCGATGTTGTCTACG 197209 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||||||||||| | || ||||| || ||||| Sbjct 197210 CTCTCAAGCGTCAAGGCCGTACCCTCTACGGTTTCGGTGGTTAA 197253 Score = 100 bits (110), Expect = 4e-17 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 196929 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 196987 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 | | ||||| |||||||||||||| ||||||||| Sbjct 196988 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGT 197021 >seq58 Length=324706 Score = 95.1 bits (104), Expect = 2e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| || ||||| ||||| || ||||||||||| ||||||||||| Sbjct 252712 TCTTCGTGACAACATCCAGGGTATCACGAAGCCTGCGATCCGTCGTCTTGCTCGTCGTGG 252771 Query 16513 TGGAGTCAAGCGTGTCTCTG 16532 ||| || |||||| |||||| Sbjct 252772 TGGTGTGAAGCGTATCTCTG 252791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074272892702