Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq15 104 3e-17
seq75 98.7 1e-15
>seq15
Length=607589
Score = 104 bits (114), Expect = 3e-17
Identities = 199/293 (68%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981
|| |||| ||| || || || | ||| || | || || || ||||| || ||
Sbjct 331300 TCCTTAATATAGGTGTCGATGAGGAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATG 331359
Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041
||||| || ||||||||||||| |||||| | ||| || ||||| || || || ||
Sbjct 331360 ATTTGGAAACCGTAGAAGCATCGAGCCTCAGGAATTTGAACTTCACCACTGAAGCGCTCG 331419
Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101
| | || || || || ||||| ||| ||||| || || || | |||||| ||
Sbjct 331420 ACAAGGTTCTCGTTGACAATTCCATCAGATGCTGCGAAGAATGCGAGGACATGTGAGATG 331479
Query 33102 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCC 33158
|| || |||||| || ||| || |||||||| | | || || || | |||
Sbjct 331480 AAGTAACGTTCGTCATCGGTGAGTCTGTTGTTCCAATCGTGAAGGTCCTTGGAGAGATCA 331539
Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| |||||| | ||||| || |||||||| ||||| || ||||| | ||||||
Sbjct 331540 ATTTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 331592
>seq75
Length=245354
Score = 98.7 bits (108), Expect = 1e-15
Identities = 200/294 (68%), Gaps = 5/294 (2%)
Strand=Plus/Minus
Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981
|| |||| ||| || || || | ||| || | || || || ||||| || ||
Sbjct 38926 TCCTTAATATAGGTGTCGATGAGGAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATG 38867
Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041
||||| || ||||||||||||| |||||| | ||| || ||||| || || || ||
Sbjct 38866 ATTTGGAAACCGTAGAAGCATCGAGCCTCAGGAATTTGAACTTCACCACTGAAGCGCTCG 38807
Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101
| | || || || || ||||| ||| ||||| || || || | |||||| ||
Sbjct 38806 ACAAGGTTCTCGTTGACAATTCCATCAGATGCTGCGAAGAATGCGAGGACATGTGAGATG 38747
Query 33102 AAATATTTTTCGTC-TGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATC 33157
|| || ||||| | || | ||| || |||||||| | | || || || | |||
Sbjct 38746 AAGTAACGCTCGTCGTCGT-TGAGTCTGTTGTTCCAATCGTGAAGGTCCTTGGAGAGATC 38688
Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| |||||| | ||||| || |||||||| ||||| || ||||| | ||||||
Sbjct 38687 AATTTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 38634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633623968714400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |