Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 104 3e-17 seq75 98.7 1e-15 >seq15 Length=607589 Score = 104 bits (114), Expect = 3e-17 Identities = 199/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| ||| || || || | ||| || | || || || ||||| || || Sbjct 331300 TCCTTAATATAGGTGTCGATGAGGAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATG 331359 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 ||||| || ||||||||||||| |||||| | ||| || ||||| || || || || Sbjct 331360 ATTTGGAAACCGTAGAAGCATCGAGCCTCAGGAATTTGAACTTCACCACTGAAGCGCTCG 331419 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 | | || || || || ||||| ||| ||||| || || || | |||||| || Sbjct 331420 ACAAGGTTCTCGTTGACAATTCCATCAGATGCTGCGAAGAATGCGAGGACATGTGAGATG 331479 Query 33102 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCC 33158 || || |||||| || ||| || |||||||| | | || || || | ||| Sbjct 331480 AAGTAACGTTCGTCATCGGTGAGTCTGTTGTTCCAATCGTGAAGGTCCTTGGAGAGATCA 331539 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | |||||| | ||||| || |||||||| ||||| || ||||| | |||||| Sbjct 331540 ATTTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 331592 >seq75 Length=245354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| ||| || || || | ||| || | || || || ||||| || || Sbjct 38926 TCCTTAATATAGGTGTCGATGAGGAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATG 38867 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 ||||| || ||||||||||||| |||||| | ||| || ||||| || || || || Sbjct 38866 ATTTGGAAACCGTAGAAGCATCGAGCCTCAGGAATTTGAACTTCACCACTGAAGCGCTCG 38807 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 | | || || || || ||||| ||| ||||| || || || | |||||| || Sbjct 38806 ACAAGGTTCTCGTTGACAATTCCATCAGATGCTGCGAAGAATGCGAGGACATGTGAGATG 38747 Query 33102 AAATATTTTTCGTC-TGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATC 33157 || || ||||| | || | ||| || |||||||| | | || || || | ||| Sbjct 38746 AAGTAACGCTCGTCGTCGT-TGAGTCTGTTGTTCCAATCGTGAAGGTCCTTGGAGAGATC 38688 Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | |||||| | ||||| || |||||||| ||||| || ||||| | |||||| Sbjct 38687 AATTTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 38634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633623968714400