Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq75 131 2e-25 seq15 116 4e-21 >seq75 Length=245354 Score = 131 bits (144), Expect = 2e-25 Identities = 391/610 (64%), Gaps = 50/610 (8%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | || || || || || |||||||| || ||| || | Sbjct 39236 GCAAGCAAAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAG 39177 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||| ||||| ||||| | ||| || || || ||||| |||| ||||| Sbjct 39176 TCCGGGCATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAA 39117 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 |||||||| || || ||||||||||| | ||||| ||| || | | | || | || Sbjct 39116 GATACCTTCGACCGCAGCAAATGCCACGAGACGTTGGGCGAAGGTAGAGTTCTT-GTCCT 39058 Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG----TAGTG-------- 93317 | |||||| | | ||||| ||||| || |||||||| || || | ||| Sbjct 39057 GAATCCATCTGACTGCCCAGTCGGCCTTCTTCTTAATGCAGGGAACTTCGTGGACGCGTC 38998 Query 93318 --------------------------TT-------TCGATAGCGTTAAATAGGTAATCTC 93344 || | ||||| || || ||||| || Sbjct 38997 AGCAAGTATAGAAGATCAAAGATAACTTACTGGGATGAATAGCATTGAAAAGGTATGATC 38938 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 | | | | || || || || ||||| | ||||| || | ||||| |||| | Sbjct 38937 GTTTGCCTTGCTCCTTAATATAGGTGTCGATGAGGAGAGAGTAGGTCTCAGAGTGGATGT 38878 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 ||||||| |||||||| |||||||| |||| ||| || | || || ||||| | Sbjct 38877 TCTCCATCATGATTTGGAAACCGTAGAAGCATCGAGCCTCAGGAATTTGAACTTCACCAC 38818 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 || | ||| || || || || ||||| || ||||| |||||||| || || || | | Sbjct 38817 TGAAGCGCTCGACAAGGTTCTCGTTGACAATTCCATCAGATGCTGCGAAGAATGCGAGGA 38758 Query 93525 TATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTT 93581 ||| || || | ||| || || || || || | ||||||| || || | Sbjct 38757 CATGTGAGATGAAGTAACGCTCGTCGTCGTTGAGTCTGTTGTTCCAATCGTGAAGGTCCT 38698 Query 93582 TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCC 93641 | || ||||| | ||||||| | ||||| || ||||| || || || |||||||| | || Sbjct 38697 TGGAGAGATCAATTTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCC 38638 Query 93642 ATATGTCTTG 93651 | || | ||| Sbjct 38637 AGATCTGTTG 38628 >seq15 Length=607589 Score = 116 bits (128), Expect = 4e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | || || || || || |||||||| || ||| || | Sbjct 330982 GCAAGCAAAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAG 331041 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||| ||||| ||||| | ||| || || || ||||| |||| ||||| Sbjct 331042 TCCGGGCATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAA 331101 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 |||||||| || || ||||||||||| | ||||| ||| || | | | || | || Sbjct 331102 GATACCTTCGACCGCAGCAAATGCCACGAGACGTTGGGCGAAGGTAGAGTTCTT-GTCCT 331160 Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 | |||||| | | ||||| ||||| || |||||||| ||||| Sbjct 331161 GAATCCATCTGACTGCCCAGTCGGCCTTCTTCTTAATGCAAGG 331203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853741789360