Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq75 131 2e-25
seq15 116 4e-21
>seq75
Length=245354
Score = 131 bits (144), Expect = 2e-25
Identities = 391/610 (64%), Gaps = 50/610 (8%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| ||||||||||| || | || || || || || |||||||| || ||| || |
Sbjct 39236 GCAAGCAAAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAG 39177
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
|| || | ||| ||||| ||||| | ||| || || || ||||| |||| |||||
Sbjct 39176 TCCGGGCATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAA 39117
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
|||||||| || || ||||||||||| | ||||| ||| || | | | || | ||
Sbjct 39116 GATACCTTCGACCGCAGCAAATGCCACGAGACGTTGGGCGAAGGTAGAGTTCTT-GTCCT 39058
Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG----TAGTG-------- 93317
| |||||| | | ||||| ||||| || |||||||| || || | |||
Sbjct 39057 GAATCCATCTGACTGCCCAGTCGGCCTTCTTCTTAATGCAGGGAACTTCGTGGACGCGTC 38998
Query 93318 --------------------------TT-------TCGATAGCGTTAAATAGGTAATCTC 93344
|| | ||||| || || ||||| ||
Sbjct 38997 AGCAAGTATAGAAGATCAAAGATAACTTACTGGGATGAATAGCATTGAAAAGGTATGATC 38938
Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404
| | | | || || || || ||||| | ||||| || | ||||| |||| |
Sbjct 38937 GTTTGCCTTGCTCCTTAATATAGGTGTCGATGAGGAGAGAGTAGGTCTCAGAGTGGATGT 38878
Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464
||||||| |||||||| |||||||| |||| ||| || | || || ||||| |
Sbjct 38877 TCTCCATCATGATTTGGAAACCGTAGAAGCATCGAGCCTCAGGAATTTGAACTTCACCAC 38818
Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524
|| | ||| || || || || ||||| || ||||| |||||||| || || || | |
Sbjct 38817 TGAAGCGCTCGACAAGGTTCTCGTTGACAATTCCATCAGATGCTGCGAAGAATGCGAGGA 38758
Query 93525 TATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTT 93581
||| || || | ||| || || || || || | ||||||| || || |
Sbjct 38757 CATGTGAGATGAAGTAACGCTCGTCGTCGTTGAGTCTGTTGTTCCAATCGTGAAGGTCCT 38698
Query 93582 TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCC 93641
| || ||||| | ||||||| | ||||| || ||||| || || || |||||||| | ||
Sbjct 38697 TGGAGAGATCAATTTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCC 38638
Query 93642 ATATGTCTTG 93651
| || | |||
Sbjct 38637 AGATCTGTTG 38628
>seq15
Length=607589
Score = 116 bits (128), Expect = 4e-21
Identities = 161/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| ||||||||||| || | || || || || || |||||||| || ||| || |
Sbjct 330982 GCAAGCAAAGTCGGTGTGAAGGCCCTCATCACGCGAGATCAACTCGTTTGAGAAGGTGAG 331041
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
|| || | ||| ||||| ||||| | ||| || || || ||||| |||| |||||
Sbjct 331042 TCCGGGCATCAGACCTCGCTTCTTCAACCAGAAAATAGACGCAAAGGAACCACTGAAAAA 331101
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
|||||||| || || ||||||||||| | ||||| ||| || | | | || | ||
Sbjct 331102 GATACCTTCGACCGCAGCAAATGCCACGAGACGTTGGGCGAAGGTAGAGTTCTT-GTCCT 331160
Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
| |||||| | | ||||| ||||| || |||||||| |||||
Sbjct 331161 GAATCCATCTGACTGCCCAGTCGGCCTTCTTCTTAATGCAAGG 331203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556853741789360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |