Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq96 150 2e-31
seq7 145 6e-30
seq102 107 2e-18
seq38 107 2e-18
>seq96
Length=182788
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||| | ||||| || || |||| | |||||||| || |
Sbjct 166437 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACAATCACATTGGAAGTGGAGTCCTCG 166496
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | ||||| ||| |||||||| ||||| || ||||| || ||||||
Sbjct 166497 GATACGATCGACAACGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAA 166556
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || ||||| ||||| ||| | |||||| || ||| | ||||| ||||||
Sbjct 166557 CAACGTCTCATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGAACCTTGTCCGACTACAAC 166616
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||||| ||||| || | || |||||| | || | || || |||
Sbjct 166617 ATCCAAAAGGAATCTACTCTGCACTTAGTTCTCCGTCTTCGTGGTGGT 166664
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288
|||| || || | ||||| || || |||| || || || ||| || | || ||| | |
Sbjct 166219 TTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCCTCTGACACCATCG 166278
Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348
|| || |||| || || |||||||||||||||||||| || |||||||||||||| |
Sbjct 166279 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAACAACGTCTGA 166338
Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408
| || || ||||| || | |||||| ||| ||| | ||||| |||||||| || || |
Sbjct 166339 TCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGG 166398
Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || ||| | || || ||| | || | || || |||
Sbjct 166399 AGTCGACCCTTCACTTGGTTCTCCGTCTCCGTGGTGGT 166436
Score = 109 bits (120), Expect = 5e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||||||||| || ||| || | || ||| | ||| || ||||
Sbjct 165949 ACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCTGACACCATCGACAATGTCAAGTCC 166008
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || |||||||||||||| ||||| || || || |||||||| || || || |||||
Sbjct 166009 AAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAGCAACGTCTGATCTTCGCGGGCAAG 166068
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | ||||| ||||| ||||||| |||||||| || || || || ||
Sbjct 166069 CAACTTGAGGACGGTCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCTAC 166121
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| || || || || |||| | ||||| || | |
Sbjct 166665 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCA 166724
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | || || || || || ||||| || || ||||| || ||
Sbjct 166725 GACACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAG 166784
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || ||||| |||||| |||||| | ||||||||||
Sbjct 166785 CAGCGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGCGATTACAAC 166844
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|| ||||| || ||| | || || || |||||
Sbjct 166845 ATCCAAAAGGAGAGCACTCTGCACTTGGTCTTGCG 166879
>seq7
Length=756160
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||| | ||||| || || | || | ||||||||| || |
Sbjct 415430 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACAATTACATTGGAAGTGGAATCCTCG 415489
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | ||||| ||| |||||||| ||||| || ||||| || ||||||
Sbjct 415490 GATACGATCGACAACGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAA 415549
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || || || ||||| || | |||||| || ||| | ||||| ||||||
Sbjct 415550 CAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGTCGAACCTTGTCCGACTACAAC 415609
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||||| ||||| ||| | || |||||| | || | || || |||
Sbjct 415610 ATCCAAAAGGAATCTACCCTGCACTTAGTTCTCCGTCTTCGTGGTGGT 415657
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288
|||| || || | ||||| || || |||| || || || ||| | | |||||| | |
Sbjct 415212 TTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGATACCATCG 415271
Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348
|| || |||| || || ||||||||||||||||| || || |||||||||||||| |
Sbjct 415272 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTGA 415331
Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408
| || || ||||| || | |||||| ||| ||| | ||||| |||||||| || || |
Sbjct 415332 TCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGG 415391
Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || ||| | || || ||| | || | || || |||
Sbjct 415392 AGTCGACCCTGCACTTGGTTCTCCGTCTCCGTGGTGGT 415429
Score = 114 bits (126), Expect = 1e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||||||||| || ||| || |||| ||| | ||| || ||||
Sbjct 414942 ACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCCGACACCATCGACAATGTCAAGTCC 415001
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || |||||||||||||| ||||| ||||| || |||||||| || || || |||||
Sbjct 415002 AAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAACGTCTGATCTTCGCGGGCAAG 415061
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | ||||| ||||| |||| || |||||||| || || || || ||
Sbjct 415062 CAACTTGAGGACGGTCGCACTCTCTCTGACTACAACATCCAGAAGGAGTCTAC 415114
>seq102
Length=175646
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| | |
Sbjct 56364 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 56305
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || ||||| || || ||||||||||| || || |||||||| ||
Sbjct 56304 GACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAG 56245
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || || |||||||| || | || || |||||| | ||||||||||||
Sbjct 56244 CAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAAC 56185
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 56184 ATCCAGAAGGAGTCGAC 56168
>seq38
Length=423541
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| | |
Sbjct 320176 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 320117
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || ||||| || || ||||||||||| || || |||||||| ||
Sbjct 320116 GACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAG 320057
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || || |||||||| || | || || |||||| | ||||||||||||
Sbjct 320056 CAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAAC 319997
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 319996 ATCCAGAAGGAGTCGAC 319980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419722812948910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |