Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq107 109 1e-18
seq21 105 1e-17
seq61 86.0 1e-11
seq64 84.2 4e-11
>seq107
Length=158097
Score = 109 bits (120), Expect = 1e-18
Identities = 216/317 (68%), Gaps = 2/317 (1%)
Strand=Plus/Minus
Query 87604 TTCTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATG 87663
||||||| ||||||||| || |||||||| || | |||||| | | |||| || |
Sbjct 60201 TTCTTTGCCATCTTCGACGCCGACTTCTGTCCCAGATCCGACTTCTTGAAGGAACTTGTC 60142
Query 87664 CCATA-CTTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGT 87722
||| | | || | |||| | | |||||||| |||| ||| || ||||| |||
Sbjct 60141 CCACAGCATCT-CGCTGACGATAAGACGGCCATCGTTCAGAGCCCGCAATTCTTCCGGGT 60083
Query 87723 GCGTCCAGACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCG 87782
|| ||||||| |||||||||| | || ||| | |||| || || ||||||||
Sbjct 60082 CAGTGACAACCAGACGTGGGTAGAGCAAGGCGCGGGTGGTATCCAAGAGCTCTTCTACCG 60023
Query 87783 CTTCATCCAGGTGTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTAT 87842
| | | |||| ||| | || || || | | ||||| |||| ||| |
Sbjct 60022 CGTGGTGGAGGTCAACCGCAACCGATGGGGTGCATCCATCTGCGTTGGTAGCAATGCCGT 59963
Query 87843 GTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGA 87902
||| || |||||||| || || | | || |||||||| || ||||| ||| ||| ||
Sbjct 59962 GTACCGGCGCGAGGCTCTCGTCGAAGTCGGTGGCACTGCAGAGATCGGCTTCTCCGAAGA 59903
Query 87903 TGTCCACACCGGTTTCT 87919
||||||||| || ||||
Sbjct 59902 TGTCCACACGGGCTTCT 59886
>seq21
Length=525775
Score = 105 bits (116), Expect = 1e-17
Identities = 215/317 (68%), Gaps = 2/317 (1%)
Strand=Plus/Minus
Query 87604 TTCTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATG 87663
||||||| ||||||||| || |||||||| || | |||||| | | |||| || |
Sbjct 438345 TTCTTTGCCATCTTCGACGCCGACTTCTGTCCCAGATCCGACTTCTTGAAGGAACTTGTC 438286
Query 87664 CCATA-CTTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGT 87722
||| | | || | |||| | | |||||||| |||| ||| || ||||| ||
Sbjct 438285 CCACAGCATCT-CGCTGACGACAAGACAGCCATCGTTCAGAGCCCGCAATTCTTCCGAGT 438227
Query 87723 GCGTCCAGACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCG 87782
|| |||||||| |||||||||| | || ||| | |||| || || ||||||||
Sbjct 438226 CAGTGACGACCAGACGTGGGTAGAGCAAGGCGCGGGTGGTATCCAAGAGCTCTTCTACCG 438167
Query 87783 CTTCATCCAGGTGTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTAT 87842
| | | |||| ||| | || ||||| | | ||||| |||| || |
Sbjct 438166 CGTGGTGGAGGTCAACCGCAACCGATGGGGCGCATCCATCTGCGTTGGTAGCAACGCCGT 438107
Query 87843 GTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGA 87902
||| || |||| ||||| || | | || |||||||| |||||||| ||| || ||
Sbjct 438106 GTACCGCCGCGCAGCCCTCGTTGAAGTGGGTGGCACTGCAGAAATCGGCTTCTCAGAAGA 438047
Query 87903 TGTCCACACCGGTTTCT 87919
||||||||| || ||||
Sbjct 438046 TGTCCACACGGGCTTCT 438030
>seq61
Length=317061
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC---CCAGGCCAC 280240
||| || || || ||||| ||||| ||||| |||| || |||||||| || || |
Sbjct 116184 CAACGGAGCTGGAAAGTCAACCCTGATCAAGCTCCTCACCGGCGAGACGATCCCCACCTC 116243
Query 280241 TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTT 280300
|| | || ||| ||||||||||||| |||| || | ||| || |||||||| |
Sbjct 116244 TG-GTCGT--GTTGAGAAGCATCCCAACTTGCGTATTGGATACATCAAGCAGCACGCCCT 116300
Query 280301 CCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360
| | ||| | |||| || | || | ||| || ||||||||| |||| ||||| || ||
Sbjct 116301 CGAGCACGTTGAGATGCATTTAGAAAAGACACCCAACCAATACCTTCAATGGCGTTACGC 116360
Query 280361 AA 280362
||
Sbjct 116361 AA 116362
>seq64
Length=284877
Score = 84.2 bits (92), Expect = 4e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || ||||| |||||||||||||||||||| || || || | ||||| | ||
Sbjct 112210 GTCGGGTCCCTGTCTGGTGGTTGGAAGATGAAGCTCGCTCTGGCTAGAGCCATGTTGATG 112269
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799
||||||||||| || ||||| ||||| |||||||| ||||
Sbjct 112270 AAAGCCGATGTCCTTCTTCTTGACGAGCCTACCAACCATTTGGA 112313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027823446472774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |