Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq107 109 1e-18 seq21 105 1e-17 seq61 86.0 1e-11 seq64 84.2 4e-11 >seq107 Length=158097 Score = 109 bits (120), Expect = 1e-18 Identities = 216/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 87604 TTCTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATG 87663 ||||||| ||||||||| || |||||||| || | |||||| | | |||| || | Sbjct 60201 TTCTTTGCCATCTTCGACGCCGACTTCTGTCCCAGATCCGACTTCTTGAAGGAACTTGTC 60142 Query 87664 CCATA-CTTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGT 87722 ||| | | || | |||| | | |||||||| |||| ||| || ||||| ||| Sbjct 60141 CCACAGCATCT-CGCTGACGATAAGACGGCCATCGTTCAGAGCCCGCAATTCTTCCGGGT 60083 Query 87723 GCGTCCAGACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCG 87782 || ||||||| |||||||||| | || ||| | |||| || || |||||||| Sbjct 60082 CAGTGACAACCAGACGTGGGTAGAGCAAGGCGCGGGTGGTATCCAAGAGCTCTTCTACCG 60023 Query 87783 CTTCATCCAGGTGTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTAT 87842 | | | |||| ||| | || || || | | ||||| |||| ||| | Sbjct 60022 CGTGGTGGAGGTCAACCGCAACCGATGGGGTGCATCCATCTGCGTTGGTAGCAATGCCGT 59963 Query 87843 GTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGA 87902 ||| || |||||||| || || | | || |||||||| || ||||| ||| ||| || Sbjct 59962 GTACCGGCGCGAGGCTCTCGTCGAAGTCGGTGGCACTGCAGAGATCGGCTTCTCCGAAGA 59903 Query 87903 TGTCCACACCGGTTTCT 87919 ||||||||| || |||| Sbjct 59902 TGTCCACACGGGCTTCT 59886 >seq21 Length=525775 Score = 105 bits (116), Expect = 1e-17 Identities = 215/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 87604 TTCTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATG 87663 ||||||| ||||||||| || |||||||| || | |||||| | | |||| || | Sbjct 438345 TTCTTTGCCATCTTCGACGCCGACTTCTGTCCCAGATCCGACTTCTTGAAGGAACTTGTC 438286 Query 87664 CCATA-CTTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGT 87722 ||| | | || | |||| | | |||||||| |||| ||| || ||||| || Sbjct 438285 CCACAGCATCT-CGCTGACGACAAGACAGCCATCGTTCAGAGCCCGCAATTCTTCCGAGT 438227 Query 87723 GCGTCCAGACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCG 87782 || |||||||| |||||||||| | || ||| | |||| || || |||||||| Sbjct 438226 CAGTGACGACCAGACGTGGGTAGAGCAAGGCGCGGGTGGTATCCAAGAGCTCTTCTACCG 438167 Query 87783 CTTCATCCAGGTGTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTAT 87842 | | | |||| ||| | || ||||| | | ||||| |||| || | Sbjct 438166 CGTGGTGGAGGTCAACCGCAACCGATGGGGCGCATCCATCTGCGTTGGTAGCAACGCCGT 438107 Query 87843 GTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGA 87902 ||| || |||| ||||| || | | || |||||||| |||||||| ||| || || Sbjct 438106 GTACCGCCGCGCAGCCCTCGTTGAAGTGGGTGGCACTGCAGAAATCGGCTTCTCAGAAGA 438047 Query 87903 TGTCCACACCGGTTTCT 87919 ||||||||| || |||| Sbjct 438046 TGTCCACACGGGCTTCT 438030 >seq61 Length=317061 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC---CCAGGCCAC 280240 ||| || || || ||||| ||||| ||||| |||| || |||||||| || || | Sbjct 116184 CAACGGAGCTGGAAAGTCAACCCTGATCAAGCTCCTCACCGGCGAGACGATCCCCACCTC 116243 Query 280241 TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTT 280300 || | || ||| ||||||||||||| |||| || | ||| || |||||||| | Sbjct 116244 TG-GTCGT--GTTGAGAAGCATCCCAACTTGCGTATTGGATACATCAAGCAGCACGCCCT 116300 Query 280301 CCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 | | ||| | |||| || | || | ||| || ||||||||| |||| ||||| || || Sbjct 116301 CGAGCACGTTGAGATGCATTTAGAAAAGACACCCAACCAATACCTTCAATGGCGTTACGC 116360 Query 280361 AA 280362 || Sbjct 116361 AA 116362 >seq64 Length=284877 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| || || || | ||||| | || Sbjct 112210 GTCGGGTCCCTGTCTGGTGGTTGGAAGATGAAGCTCGCTCTGGCTAGAGCCATGTTGATG 112269 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799 ||||||||||| || ||||| ||||| |||||||| |||| Sbjct 112270 AAAGCCGATGTCCTTCTTCTTGACGAGCCTACCAACCATTTGGA 112313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823446472774