Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq15 107 4e-18 seq75 100 6e-16 seq64 100 6e-16 >seq15 Length=607589 Score = 107 bits (118), Expect = 4e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 ||||| || || || |||| ||| | |||||| | ||| || |||| || ||| Sbjct 330927 ATCACCGAGGCCGTCGAAATCGAGCAAGAATTCTTAACCGAGGCCCTTCCTTGTGCTCTT 330868 Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 | || |||||| | |||||| || ||||||||||| || ||||| || | || Sbjct 330867 CTCGGTATGAACGCAACTCTCATGAAGCAATACATCGAATTTGTTGCCGATCGTCTGCTC 330808 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 | || || || | ||||| || ||||| || | ||||| || | ||| |||||| | Sbjct 330807 CTTGCCCTCGGAAACGAGAAGGTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAAC 330748 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || || ||| || || || ||||||||||| ||||||||| |||| || ||| Sbjct 330747 ATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAA 330694 >seq75 Length=245354 Score = 100 bits (110), Expect = 6e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 ||||| || || || ||| ||| | |||||| | ||| || |||| || ||| Sbjct 39291 ATCACCGAGGCCGTCCAAATCGAGCAAGAATTCTTAACCGAGGCCCTTCCTTGTGCTCTT 39350 Query 243565 ATTGGCATGAACTCTGAACTC--ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 | || |||||| | ||||| ||| || |||||||| || || ||||| || | Sbjct 39351 CTCGGTATGAACGC--AACTCTAATGAAGCAATACATCGAGTTTGTTGCCGATCGTCTGC 39408 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 | |||| || || ||||||| || ||||| || | ||||| || | ||| |||||| Sbjct 39409 TTCTCGCCCTCGGAAATGAGAAGGTCTACAAGTCTACCAACCCATTCGACTTCATGGAGA 39468 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||| || ||| || || || ||||||||||| ||||||||| |||| || ||| Sbjct 39469 ACATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAA 39524 >seq64 Length=284877 Score = 100 bits (110), Expect = 6e-16 Identities = 204/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 333693 AGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 333752 |||| |||||| ||| || ||| || | ||| ||||| || | || ||||| ||| Sbjct 112517 AGGGTGTAGTAGCTCTTTGCTTCAGGCTTTTGCTTGACGAATTCAGCCAAGTTTCCTTTG 112458 Query 333753 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGG 333812 || || ||||| ||||||||| ||| || ||||| || | || || Sbjct 112457 TAGCATTTAAGCTTCTTTCCAGGTTCGTAGTGGTAGATGTCCGTGCACACTTCATCAAGA 112398 Query 333813 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGA--TCAGGTATT 333870 || ||||||||||| || ||||||| | | | || | | ||| | ||||| | Sbjct 112397 AATCCGGAGTCGTGAGAAACAATCAAACTGGTGATTTCGGTGTG--TGACTTGAGGTACT 112340 Query 333871 CAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTA 333930 | ||||||| | ||||||| ||| | ||||||||| |||||||||||||| || | Sbjct 112339 CTTGCAGCCACTTGACGTTAGCTACATCCAAATGGTTGGTAGGCTCGTCAAGAAGAAGGA 112280 Query 333931 GCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAA 333990 | || |||| | ||| || | || |||||||| ||||| ||||| || || || | Sbjct 112279 CATCGGCTTTCATCAACATGGCTCTAGCCAGAGCGAGCTTCATCTTCCAACCACCAGACA 112220 Query 333991 G 333991 | Sbjct 112219 G 112219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102865671520900