Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq7 105 7e-18
seq96 96.9 4e-15
seq59 89.7 6e-13
seq10 89.7 6e-13
>seq7
Length=756160
Score = 105 bits (116), Expect = 7e-18
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032
|| ||| | ||||| | | |||||| ||||| |||| |||||||||||||| || |||
Sbjct 415893 ATCTATTGGCCTCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTG 415834
Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092
||||| || || || | || ||||| |||||||||||||| || | ||| ||||||
Sbjct 415833 TAATCGCTCAAGGTGCGACCATCCTCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGG 415774
Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 42152
|| | ||| | || ||||| ||| ||| || || | | | | |||||
Sbjct 415773 TCCGGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGAT 415714
Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || || | ||||| || || || || | ||||| || ||||| |||||
Sbjct 415713 GACTCAACTTCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 415658
Score = 86.0 bits (94), Expect = 7e-12
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|||||||| || ||||| || | || || || | || || || ||||| ||||||||
Sbjct 415620 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGTTGCTTGCCAGCGAAA 415561
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
||||| || || || || | || | || ||||| || ||| | |||| ||||| |||
Sbjct 415560 ATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCT-TGAATCTTTGATTTGA-CGT 415503
Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||| || |||||||| || | || || || ||||| || || ||||| |
Sbjct 415502 TGTCGATCGTATCCGAGGATTCCACTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGA 415443
Query 42196 CAAAGATTTGCAT 42208
| |||||||||||
Sbjct 415442 CGAAGATTTGCAT 415430
>seq96
Length=182788
Score = 96.9 bits (106), Expect = 4e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| ||||| |||| |||||||||||||| || |||||||| || || || |
Sbjct 166880 ACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACC 166821
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || | |||||||||||| || || | |||||||||||| | ||| | || |||||
Sbjct 166820 ATCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTT 166761
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| || || | | | | ||||| || || || || | |||||
Sbjct 166760 ATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAACTTCTAATGTGAT 166701
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || || | ||||| || ||||| |||||
Sbjct 166700 TGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665
Score = 86.0 bits (94), Expect = 7e-12
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|||||||| || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 166627 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGCTGCTTGCCAGCAAAA 166568
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
||||| || || || || | || | || ||||| || ||| | |||| ||||| |||
Sbjct 166567 ATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCT-TGAATCTTTGATTTGA-CGT 166510
Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||| || || ||||| || | ||||| || ||||| || || ||||| |
Sbjct 166509 TGTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGA 166450
Query 42196 CAAAGATTTGCAT 42208
| |||||||||||
Sbjct 166449 CGAAGATTTGCAT 166437
>seq59
Length=321881
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||| || |||| || || ||||| || ||||| |
Sbjct 265768 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 265827
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | | |||||||||| ||| || ||||| |
Sbjct 265828 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 265887
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | |||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 265888 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 265947
Query 42199 AG 42200
||
Sbjct 265948 AG 265949
>seq10
Length=717553
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||| || |||| || || ||||| || ||||| |
Sbjct 20116 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 20057
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | | |||||||||| ||| || ||||| |
Sbjct 20056 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 19997
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | |||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 19996 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 19937
Query 42199 AG 42200
||
Sbjct 19936 AG 19935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543205914777760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |