Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq96 113 5e-20
seq102 104 2e-17
seq38 104 2e-17
seq7 104 2e-17
>seq96
Length=182788
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| ||||| |||||||| || | | ||| || | || || |||||||||||
Sbjct 166633 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGCTGCTTGCCA 166574
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| ||||||| || || || || || ||||| ||||| || ||||| || ||| ||
Sbjct 166573 GCAAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTGAATCTTTGATTTG 166514
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | ||||| || |||||||| | || | ||||||||||| | |||
Sbjct 166513 ACGTTGTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCTTGCCGGTGAGAGTC 166454
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| ||||||||
Sbjct 166453 TTGACGAAGATTTGCAT 166437
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | || || || || | || || || || || |||||||| || |
Sbjct 166152 ACCGCCACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 166093
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| |||| ||||| |||||||| || | || || || |||||||| || ||
Sbjct 166092 GAGAGTGCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCCGGGGG 166033
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| ||| || | || ||| || || ||
Sbjct 166032 AATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGATTCAAC 165973
Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419
|| | ||| | ||||||||||||
Sbjct 165972 CTCAAGAGTGATGGTCTTGCCGGT 165949
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|| ||||| ||||||||||| | |||||| | || || | |||||| || ||| |
Sbjct 166855 TCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAG 166796
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
|| | ||||||||||| || || || ||||| || || || || || ||| |||
Sbjct 166795 ATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTG 166736
Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432
|| | ||| || | || ||||||| || | ||||| || |||||||| || |||
Sbjct 166735 TCAATTGTGTCTGATGACTCAACTTCTAATGTGATTGTCTTTCCAGTCAAAGTCTTGACG 166676
Query 64433 AAAATTTGCAT 64443
|| || |||||
Sbjct 166675 AAGATCTGCAT 166665
>seq102
Length=175646
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| ||||| || || || ||||||||||| | | |||||| |||||
Sbjct 56153 AGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCT 56212
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||||||||| | || || || ||||||||||| || || ||||| || |||
Sbjct 56213 TCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCT 56272
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || || ||| || | || ||| | ||||| || | || | |||
Sbjct 56273 TGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTC 56332
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | || || ||||| || |||||
Sbjct 56333 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 56364
>seq38
Length=423541
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| ||||| || || || ||||||||||| | | |||||| |||||
Sbjct 319965 AGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCT 320024
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||||||||| | || || || ||||||||||| || || ||||| || |||
Sbjct 320025 TCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCT 320084
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || || ||| || | || ||| | ||||| || | || | |||
Sbjct 320085 TGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTC 320144
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | || || ||||| || |||||
Sbjct 320145 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 320176
>seq7
Length=756160
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| ||||| |||||||| || | | ||| || | || || || ||||||||
Sbjct 415626 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGTTGCTTGCCA 415567
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| ||||||| || || || || || ||||| ||||| || ||||| || ||| ||
Sbjct 415566 GCGAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTGAATCTTTGATTTG 415507
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | ||||| || |||||||| | || | ||||||||||| | |||
Sbjct 415506 ACGTTGTCGATCGTATCCGAGGATTCCACTTCCAATGTAATTGTCTTGCCGGTGAGAGTC 415447
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| ||||||||
Sbjct 415446 TTGACGAAGATTTGCAT 415430
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | || || || || | || || || || || |||||||| || |
Sbjct 415145 ACCGCCACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 415086
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| |||| ||||| |||||||| || | || || || ||||||||||||||
Sbjct 415085 GAGAGTGCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCGGGAGG 415026
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| ||| || | || || || || ||
Sbjct 415025 AATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGATTCAAC 414966
Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419
|| | ||| | ||||||||||||
Sbjct 414965 CTCAAGAGTGATGGTCTTGCCGGT 414942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499638467002160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |