Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq96 104 2e-17
seq7 98.7 9e-16
seq153 93.3 4e-14
>seq96
Length=182788
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
||||| ||||| || | || ||| ||||| || |||||||||| || |||||| |
Sbjct 166879 CGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCA 166820
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || | ||| || ||||| |||||||||||||||| || || || ||||| |||||
Sbjct 166819 TCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTA 166760
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | ||||| | ||| ||||| | || |
Sbjct 166759 TCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAACTTCTAATGTGATT 166700
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || |||| ||| || || || ||||||||
Sbjct 166699 GTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 166435 CCACCACGGAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 166376
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || || || || |||||| |||||| || || ||||| || ||
Sbjct 166375 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGGGGA 166316
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||| ||| ||||| | |||| |||||| | |||||
Sbjct 166315 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTGTCAGAGGATTCGACC 166256
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103
|||| ||| | || |||||||| || || || ||||
Sbjct 166255 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 166219
>seq7
Length=756160
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 415428 CCACCACGGAGACGGAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 415369
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || || || || |||||| |||||| || || ||||| |||||
Sbjct 415368 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGAGGG 415309
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||| ||| ||||| | |||| ||| || | | |||||
Sbjct 415308 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCAGAAGATTCGACC 415249
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103
|||| ||| | || |||||||| || || || ||||
Sbjct 415248 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 415212
>seq153
Length=80566
Score = 93.3 bits (102), Expect = 4e-14
Identities = 352/545 (65%), Gaps = 13/545 (2%)
Strand=Plus/Plus
Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTC 146693
||||| ||| |||||||| || || || ||| || | | | |||| |||||| ||
Sbjct 60300 GGCGAGAGAAGCCAAGTTGCAGACAGCTACCTCATCTGGGGCAGAGTACTCCACAATTTC 60359
Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTT 146750
| ||| |||||| || ||| | |||| || || ||||| || ||| |||
Sbjct 60360 TGTGCACAGGTTGGAGCTTCGGATTGTTCCCAGGTTCTTCTGGTTGCT---CTTTCGGTT 60416
Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAA 146810
||| | ||||||||||||||| | || |||||| ||| | || ||||| |||| |
Sbjct 60417 GCAAGCATCCTTGTAGAGCATGAAGGGGTTCCCGGTCTCGGTTTGGGCCTCGAGGATGGA 60476
Query 146811 TCTAAACAAATCTCTG-GCCTTTACTTGTCTTTCGTACAGTTTATTCT-TTTCGTATTTC 146868
|| | | |||| ||||| | | ||||| || | | |||| | |||||||||
Sbjct 60477 -GTACCAGAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTACCTTCTCTCTCGTATTTC 60534
Query 146869 TCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGA 146928
||||| | || || | ||||| |||| |||||||| | | |||||
Sbjct 60535 TCGTAGAGAGCCTCGAACTCATCCCCGTAAACGTCTGCCAGGCCGGGGCATTCGTTGGGG 60594
Query 146929 CAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAA 146988
|| | ||| | ||| ||| |||| || || || | ||| || | ||||||||||||
Sbjct 60595 CACATCAGAGTCCAGTCTCCGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAC 60654
Query 146989 AGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTG 147048
||| | | | ||||| || | ||||| || ||| || | ||
Sbjct 60655 AGGGCGTAGAAGAGATCGCGTGCACGAACTTCCTCTTTTCCATGGTTCTTTCGGAGGTCA 60714
Query 147049 AGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC 147108
|||| || | | |||| |||||| ||||| | ||| ||| | || || |||
Sbjct 60715 AGGAACTCAAAGACATCCGCATGCCATGGCTCGAGGTAGATGGCAAACGCTCCCGGACGC 60774
Query 147109 ---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACG 147165
|| || ||||||||||||| | | |||| ||||||||||| | ||||| |||
Sbjct 60775 TTGTTTCCACCCTGATCGACGTATCTTGCGGTGTTGTTGAAGACTCGGAGCATGGGCACA 60834
Query 147166 AGGCC 147170
| |||
Sbjct 60835 ATGCC 60839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475494773027360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |