Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq96 104 2e-17 seq7 98.7 9e-16 seq153 93.3 4e-14 >seq96 Length=182788 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| ||||| || | || ||| ||||| || |||||||||| || |||||| | Sbjct 166879 CGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCA 166820 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || ||||| |||||||||||||||| || || || ||||| ||||| Sbjct 166819 TCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTA 166760 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | ||||| | ||| ||||| | || | Sbjct 166759 TCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAACTTCTAATGTGATT 166700 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| ||| || || || |||||||| Sbjct 166699 GTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 166435 CCACCACGGAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 166376 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| |||||| || || ||||| || || Sbjct 166375 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGGGGA 166316 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| ||| ||||| | |||| |||||| | ||||| Sbjct 166315 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTGTCAGAGGATTCGACC 166256 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 |||| ||| | || |||||||| || || || |||| Sbjct 166255 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 166219 >seq7 Length=756160 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 415428 CCACCACGGAGACGGAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 415369 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| |||||| || || ||||| ||||| Sbjct 415368 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGAGGG 415309 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| ||| ||||| | |||| ||| || | | ||||| Sbjct 415308 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCAGAAGATTCGACC 415249 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 |||| ||| | || |||||||| || || || |||| Sbjct 415248 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 415212 >seq153 Length=80566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 352/545 (65%), Gaps = 13/545 (2%) Strand=Plus/Plus Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTC 146693 ||||| ||| |||||||| || || || ||| || | | | |||| |||||| || Sbjct 60300 GGCGAGAGAAGCCAAGTTGCAGACAGCTACCTCATCTGGGGCAGAGTACTCCACAATTTC 60359 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTT 146750 | ||| |||||| || ||| | |||| || || ||||| || ||| ||| Sbjct 60360 TGTGCACAGGTTGGAGCTTCGGATTGTTCCCAGGTTCTTCTGGTTGCT---CTTTCGGTT 60416 Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAA 146810 ||| | ||||||||||||||| | || |||||| ||| | || ||||| |||| | Sbjct 60417 GCAAGCATCCTTGTAGAGCATGAAGGGGTTCCCGGTCTCGGTTTGGGCCTCGAGGATGGA 60476 Query 146811 TCTAAACAAATCTCTG-GCCTTTACTTGTCTTTCGTACAGTTTATTCT-TTTCGTATTTC 146868 || | | |||| ||||| | | ||||| || | | |||| | ||||||||| Sbjct 60477 -GTACCAGAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTACCTTCTCTCTCGTATTTC 60534 Query 146869 TCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGA 146928 ||||| | || || | ||||| |||| |||||||| | | ||||| Sbjct 60535 TCGTAGAGAGCCTCGAACTCATCCCCGTAAACGTCTGCCAGGCCGGGGCATTCGTTGGGG 60594 Query 146929 CAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAA 146988 || | ||| | ||| ||| |||| || || || | ||| || | |||||||||||| Sbjct 60595 CACATCAGAGTCCAGTCTCCGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAC 60654 Query 146989 AGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTG 147048 ||| | | | ||||| || | ||||| || ||| || | || Sbjct 60655 AGGGCGTAGAAGAGATCGCGTGCACGAACTTCCTCTTTTCCATGGTTCTTTCGGAGGTCA 60714 Query 147049 AGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC 147108 |||| || | | |||| |||||| ||||| | ||| ||| | || || ||| Sbjct 60715 AGGAACTCAAAGACATCCGCATGCCATGGCTCGAGGTAGATGGCAAACGCTCCCGGACGC 60774 Query 147109 ---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACG 147165 || || ||||||||||||| | | |||| ||||||||||| | ||||| ||| Sbjct 60775 TTGTTTCCACCCTGATCGACGTATCTTGCGGTGTTGTTGAAGACTCGGAGCATGGGCACA 60834 Query 147166 AGGCC 147170 | ||| Sbjct 60835 ATGCC 60839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494773027360