Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq155 120 5e-22 seq153 120 5e-22 >seq155 Length=79386 Score = 120 bits (132), Expect = 5e-22 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCAC-GGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || |||||||| || | || | ||| | | || | | || || ||||| Sbjct 55053 TCTTGATCGACGGTGAACTGGATCG-GTGCGGTGGCTGCCATGGTGCGGAGGTAATACAT 55111 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CGT 203954 ||||||||| || ||| || ||| || | ||||||| | | |||| || ||| Sbjct 55112 GCCGGTCTTCAGACCCAACTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATCGT 55171 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 |||| || |||||| ||||||| |||||| ||| || ||||| ||| || ||||| Sbjct 55172 TGGG-TCCCTCATGTGGATGTTCATCGACTGGGATTGATCAATGAA-GGCACCACGATCA 55229 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||| | || || ||| || || |||||||| ||||||||| ||| | || Sbjct 55230 GCAGCCATCTGGACGATCGTCCGTTGAGAGATCTCCCAGACCGTCTTGTACAGAGCCTTG 55289 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 ||| || | || | | || ||| || ||||| || || || | | | Sbjct 55290 ATGTCGGCTGGGATAT-TGGGGATGTTCTGGATGGAGCCACCCTCAGCGATGATGCGGTT 55348 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 || | | || ||| | |||| | || ||| | || ||||||| Sbjct 55349 TTTCATGTTGTCAGACCAGAGACCCATGTCCACGAGATCCTTGAGGAGCCAAGGGTTGAC 55408 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || || || ||||| | |||||| | || | | | | |||| |||| |||| ||||| Sbjct 55409 GACTTGGAATTCTCCAGCCAGCACACGACGAGAGTAAATGTTGGAGGTGTATGGCTCGAA 55468 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||| ||| | ||||||| ||||||||| || ||||||||||||| ||| || Sbjct 55469 GCATTCGTTGAAGCCCAGAATCTGACTGGTGCTGGCAGTTGGCATGGGAGCCACGAGGAG 55528 Query 204313 GGAGTTGCGCACACCGT 204329 |||||||| ||||||| Sbjct 55529 AGAGTTGCGGACACCGT 55545 Score = 120 bits (132), Expect = 5e-22 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCAC-GGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || |||||||| || | || | ||| | | || | | || || ||||| Sbjct 55886 TCTTGATCGACGGTGAACTGGATCG-GTGCGGTGGCTGCCATGGTGCGGAGGTAATACAT 55944 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CGT 203954 ||||||||| || ||| || ||| || | ||||||| | | |||| || ||| Sbjct 55945 GCCGGTCTTCAGACCCAACTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATCGT 56004 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 |||| || |||||| ||||||| |||||| ||| || ||||| ||| || ||||| Sbjct 56005 TGGG-TCCCTCATGTGGATGTTCATCGACTGGGATTGATCAATGAA-GGCACCACGATCA 56062 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||| | || || ||| || || |||||||| ||||||||| ||| | || Sbjct 56063 GCAGCCATCTGGACGATCGTCCGTTGAGAGATCTCCCAGACCGTCTTGTACAGAGCCTTG 56122 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 ||| || | || | | || ||| || ||||| || || || | | | Sbjct 56123 ATGTCGGCTGGGATAT-TGGGGATGTTCTGGATGGAGCCACCCTCAGCGATGATGCGGTT 56181 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 || | | || ||| | |||| | || ||| | || ||||||| Sbjct 56182 TTTCATGTTGTCAGACCAGAGACCCATGTCCACGAGATCCTTGAGGAGCCAAGGGTTGAC 56241 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || || || ||||| | |||||| | || | | | | |||| |||| |||| ||||| Sbjct 56242 GACTTGGAATTCTCCAGCCAGCACACGACGAGAGTAAATGTTGGAGGTGTATGGCTCGAA 56301 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||| ||| | ||||||| ||||||||| || ||||||||||||| ||| || Sbjct 56302 GCATTCGTTGAAGCCCAGAATCTGACTGGTGCTGGCAGTTGGCATGGGAGCCACGAGGAG 56361 Query 204313 GGAGTTGCGCACACCGT 204329 |||||||| ||||||| Sbjct 56362 AGAGTTGCGGACACCGT 56378 >seq153 Length=80566 Score = 120 bits (132), Expect = 5e-22 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCAC-GGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || |||||||| || | || | ||| | | || | | || || ||||| Sbjct 59383 TCTTGATCGACGGTGAACTGGATCG-GTGCGGTGGCTGCCATGGTGCGGAGGTAATACAT 59441 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CGT 203954 ||||||||| || ||| || ||| || | ||||||| | | |||| || ||| Sbjct 59442 GCCGGTCTTCAGACCCAACTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATCGT 59501 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 |||| || |||||| ||||||| |||||| ||| || ||||| ||| || ||||| Sbjct 59502 TGGG-TCCTTCATGTGGATGTTCATCGACTGGGATTGATCAATGAA-GGCACCACGATCA 59559 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||| | || || ||| || || |||||||| ||||||||| ||| | || Sbjct 59560 GCAGCCATCTGGACGATCGTCCGTTGAGAGATCTCCCAGACCGTCTTGTACAGAGCCTTG 59619 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 ||| || | || | | || ||| || ||||| || || || | | | Sbjct 59620 ATGTCGGCTGGGATAT-TGGGGATGTTCTGGATGGAGCCACCCTCAGCGATGATGCGGTT 59678 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 || | | || ||| | |||| | || ||| | || ||||||| Sbjct 59679 TTTCATGTTGTCAGACCAGAGACCCATGTCCACGAGATCCTTGAGGAGCCAAGGGTTGAC 59738 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || || || ||||| | |||||| | || | | | | |||| |||| |||| ||||| Sbjct 59739 GACTTGGAATTCTCCAGCCAGCACACGACGAGAGTAAATGTTGGAGGTGTATGGCTCGAA 59798 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||| ||| | ||||||| ||||||||| || ||||||||||||| ||| || Sbjct 59799 GCATTCGTTGAAGCCCAGAATCTGACTGGTGCTGGCAGTTGGCATGGGAGCCACGAGGAG 59858 Query 204313 GGAGTTGCGCACACCGT 204329 |||||||| ||||||| Sbjct 59859 AGAGTTGCGGACACCGT 59875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145121407840