Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq102 116 4e-21 seq38 116 4e-21 seq59 107 2e-18 seq10 107 2e-18 seq96 105 8e-18 seq7 100 3e-16 >seq102 Length=175646 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| ||||| |||||||||||||| Sbjct 56173 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAA 56232 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||| |||||||||| || | | |||||||| |||||| |||| | Sbjct 56233 GATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTTGACATT 56292 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | ||||| || |||||||| || || || || Sbjct 56293 GTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 56352 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 56353 GAAGATCTGCAT 56364 >seq38 Length=423541 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| ||||| |||||||||||||| Sbjct 319985 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAA 320044 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||| |||||||||| || | | |||||||| |||||| |||| | Sbjct 320045 GATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTTGACATT 320104 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | ||||| || |||||||| || || || || Sbjct 320105 GTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 320164 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 320165 GAAGATCTGCAT 320176 >seq59 Length=321881 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || |||||||| |||| || || ||||| |||||||| | Sbjct 265768 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 265827 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | | |||||||||| |||||| |||| | Sbjct 265828 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 265887 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| |||||||| || || || || | Sbjct 265888 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 265947 Query 46584 AG 46585 || Sbjct 265948 AG 265949 >seq10 Length=717553 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || |||||||| |||| || || ||||| |||||||| | Sbjct 20116 CCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGA 20057 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | | |||||||||| |||||| |||| | Sbjct 20056 TCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT 19997 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| |||||||| || || || || | Sbjct 19996 CGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 19937 Query 46584 AG 46585 || Sbjct 19936 AG 19935 >seq96 Length=182788 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || || |||||||| ||||| Sbjct 166116 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCAAGTTGCTTGCCCGCGAA 166057 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || |||||||| | || | || ||||||||| |||||| ||||| | Sbjct 166056 GATCAGACGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 165997 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | ||||| ||||| || || | |||||||| ||||| || Sbjct 165996 GTCGATGGTGTCAGAGGATTCAACCTCAAGAGTGATGGTCTTGCCGGT 165949 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 |||| ||| || | | |||||| |||| |||| || |||||||||||||| ||||| Sbjct 166897 TATTGGCCGCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAA 166838 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 ||| | ||||| | || || | |||||| || || || ||||| ||||||||||| Sbjct 166837 TCGCTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCC 166778 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | || ||||| ||| |||||| ||| | | | | ||||| || Sbjct 166777 GGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGAC 166718 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | ||||| || || || |||| || || || ||||| ||||| Sbjct 166717 TCAACTTCTAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || | || ||||| |||||||| ||||| Sbjct 166400 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAA 166341 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || || || || | || | | ||||||||| ||||||| ||||| | Sbjct 166340 GATCAGACGTTGTTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACATT 166281 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||||| || || | |||||||| ||||| || || || || || Sbjct 166280 GTCGATGGTGTCAGAGGATTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 166221 Query 46582 AA 46583 || Sbjct 166220 AA 166219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| | || || | || |||||||||||||| || || Sbjct 166627 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGCTGCTTGCCAGCAAAA 166568 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | || ||||| || ||||| |||| ||| Sbjct 166567 ATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTGAATCTTTGATTTGA-CGTT 166509 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||| || || ||||| |||| ||||| || ||||| || || || || || Sbjct 166508 GTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGAC 166449 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 166448 GAAGATTTGCAT 166437 >seq7 Length=756160 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 |||| |||||| | | |||||| |||| |||| || |||||||||||||| ||||| Sbjct 415890 TATTGGCCTCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAA 415831 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 ||| | ||||| | || || || ||||| || ||||| ||||| || |||||||| Sbjct 415830 TCGCTCAAGGTGCGACCATCCTCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGGTCC 415771 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | || ||||| ||| |||||| ||| | | | | ||||| || Sbjct 415770 GGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGAC 415711 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | ||||| || || || |||| || || || ||||| ||||| Sbjct 415710 TCAACTTCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 415658 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || | || ||||| |||||||| ||||| Sbjct 415393 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAA 415334 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || || || || | || | | ||||||||| ||||||| ||||| | Sbjct 415333 GATCAGACGTTGTTGATCAGGAGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACATT 415274 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||||| || || | |||||||| ||||| || || || || || Sbjct 415273 GTCGATGGTATCAGAAGATTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 415214 Query 46582 AA 46583 || Sbjct 415213 AA 415212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| | || || | || ||||| |||||||| ||||| Sbjct 415620 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTCGAGTTGCTTGCCAGCGAAA 415561 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | || ||||| || ||||| |||| ||| Sbjct 415560 ATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTGAATCTTTGATTTGA-CGTT 415502 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||| || |||||||| |||| || || || ||||| || || || || || Sbjct 415501 GTCGATCGTATCCGAGGATTCCACTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGAC 415442 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 415441 GAAGATTTGCAT 415430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231235603280