Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7 120 1e-21 seq96 102 3e-16 seq4 87.8 7e-12 seq18 84.2 9e-11 >seq7 Length=756160 Score = 120 bits (132), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || ||||| | || || ||||| || Sbjct 415430 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACAATTACATTGGAAGTGGAATCCTCG 415489 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | ||| ||| ||||||||||||||||| ||||| || |||||| Sbjct 415490 GATACGATCGACAACGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAA 415549 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | |||||| | || || ||||| || ||||| |||| ||| | || || || Sbjct 415550 CAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGTCGAACCTTGTCCGACTACAAC 415609 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || |||||||| Sbjct 415610 ATCCAAAAGGAATCTACCCTGCACTTAGT 415638 Score = 89.7 bits (98), Expect = 2e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 391062 GTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAA 391121 || || || || || || || || || || || || || ||||| ||||||| ||| || Sbjct 415214 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGATACCATCGAC 415273 Query 391122 GCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATT 391181 | | || || || ||||| ||||| || || |||||||||||||||||| | || Sbjct 415274 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTGATC 415333 Query 391182 TTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGAT 391241 ||| | || || ||||| || ||||| | || || | || || || || | ||||| Sbjct 415334 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 415393 Query 391242 GCAACACTTCACTTAGT 391258 | || || ||||| || Sbjct 415394 TCGACCCTGCACTTGGT 415410 >seq96 Length=182788 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || || | || || || || || Sbjct 166437 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACAATCACATTGGAAGTGGAGTCCTCG 166496 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | ||| ||| ||||||||||||||||| ||||| || |||||| Sbjct 166497 GATACGATCGACAACGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAA 166556 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || || || ||||| |||| ||| | || || || Sbjct 166557 CAACGTCTCATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGAACCTTGTCCGACTACAAC 166616 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || |||||||| Sbjct 166617 ATCCAAAAGGAATCTACTCTGCACTTAGT 166645 Score = 89.7 bits (98), Expect = 2e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 391062 GTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAA 391121 || || || || || || || || || || || || || ||||| ||||| | ||| || Sbjct 166221 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCCTCTGACACCATCGAC 166280 Query 391122 GCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATT 391181 | | || || || ||||| ||||| || ||||| ||||||||||||||| | || Sbjct 166281 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAACAACGTCTGATC 166340 Query 391182 TTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGAT 391241 ||| | || || ||||| || ||||| | || || | || || || || | ||||| Sbjct 166341 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 166400 Query 391242 GCAACACTTCACTTAGT 391258 | || |||||||| || Sbjct 166401 TCGACCCTTCACTTGGT 166417 >seq4 Length=923518 Score = 87.8 bits (96), Expect = 7e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867 ||||| |||||||| | | |||||| || | ||||| ||| |||||||| || || || Sbjct 127554 GTAAAAACAACAGTCCTGGCAGGCATGTTCAAACCAATAGAGAAAGTTTCTGTAGCAAAA 127495 Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926 | ||||| || || |||| ||| | | |||||||||| | ||||| ||||| || | Sbjct 127494 AGCACTTTGATCAAGTTTTCTTGGA-ACAGAATTTCAATCGTCTCTTTCAAAATTGGCAG 127436 Query 420927 TATACCAGAATGATG 420941 | |||||||||||| Sbjct 127435 CAAACCAGAATGATG 127421 >seq18 Length=542397 Score = 84.2 bits (92), Expect = 9e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867 ||||| |||||||| | | |||||| || | ||||| ||| |||||||| || || || Sbjct 86180 GTAAAAACAACAGTCCTGGCAGGCATGTTCAAACCAATAGAGAAAGTTTCTGTAGCAAAA 86121 Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926 | ||||| || || |||| ||| | | |||||||||| | ||||| | ||| || | Sbjct 86120 AGCACTTTGATCAAGTTTTCTTGGA-ACAGAATTTCAATCGTCTCTTTCAGAATTGGCAG 86062 Query 420927 TATACCAGAATGATG 420941 | |||||||||||| Sbjct 86061 CAAACCAGAATGATG 86047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975692731713512