Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq7 120 1e-21
seq96 102 3e-16
seq4 87.8 7e-12
seq18 84.2 9e-11
>seq7
Length=756160
Score = 120 bits (132), Expect = 1e-21
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || || || || ||||| | || || ||||| ||
Sbjct 415430 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACAATTACATTGGAAGTGGAATCCTCG 415489
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || || | ||| ||| ||||||||||||||||| ||||| || ||||||
Sbjct 415490 GATACGATCGACAACGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAA 415549
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | |||||| | || || ||||| || ||||| |||| ||| | || || ||
Sbjct 415550 CAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGTCGAACCTTGTCCGACTACAAC 415609
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || || ||||||||
Sbjct 415610 ATCCAAAAGGAATCTACCCTGCACTTAGT 415638
Score = 89.7 bits (98), Expect = 2e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 391062 GTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAA 391121
|| || || || || || || || || || || || || ||||| ||||||| ||| ||
Sbjct 415214 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGATACCATCGAC 415273
Query 391122 GCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATT 391181
| | || || || ||||| ||||| || || |||||||||||||||||| | ||
Sbjct 415274 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTGATC 415333
Query 391182 TTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGAT 391241
||| | || || ||||| || ||||| | || || | || || || || | |||||
Sbjct 415334 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 415393
Query 391242 GCAACACTTCACTTAGT 391258
| || || ||||| ||
Sbjct 415394 TCGACCCTGCACTTGGT 415410
>seq96
Length=182788
Score = 102 bits (112), Expect = 3e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || || || || || || | || || || || ||
Sbjct 166437 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACAATCACATTGGAAGTGGAGTCCTCG 166496
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || || | ||| ||| ||||||||||||||||| ||||| || ||||||
Sbjct 166497 GATACGATCGACAACGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAA 166556
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | ||||| | || || || || || ||||| |||| ||| | || || ||
Sbjct 166557 CAACGTCTCATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGAACCTTGTCCGACTACAAC 166616
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || || ||||||||
Sbjct 166617 ATCCAAAAGGAATCTACTCTGCACTTAGT 166645
Score = 89.7 bits (98), Expect = 2e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 391062 GTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAA 391121
|| || || || || || || || || || || || || ||||| ||||| | ||| ||
Sbjct 166221 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCCTCTGACACCATCGAC 166280
Query 391122 GCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATT 391181
| | || || || ||||| ||||| || ||||| ||||||||||||||| | ||
Sbjct 166281 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAACAACGTCTGATC 166340
Query 391182 TTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGAT 391241
||| | || || ||||| || ||||| | || || | || || || || | |||||
Sbjct 166341 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 166400
Query 391242 GCAACACTTCACTTAGT 391258
| || |||||||| ||
Sbjct 166401 TCGACCCTTCACTTGGT 166417
>seq4
Length=923518
Score = 87.8 bits (96), Expect = 7e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867
||||| |||||||| | | |||||| || | ||||| ||| |||||||| || || ||
Sbjct 127554 GTAAAAACAACAGTCCTGGCAGGCATGTTCAAACCAATAGAGAAAGTTTCTGTAGCAAAA 127495
Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926
| ||||| || || |||| ||| | | |||||||||| | ||||| ||||| || |
Sbjct 127494 AGCACTTTGATCAAGTTTTCTTGGA-ACAGAATTTCAATCGTCTCTTTCAAAATTGGCAG 127436
Query 420927 TATACCAGAATGATG 420941
| ||||||||||||
Sbjct 127435 CAAACCAGAATGATG 127421
>seq18
Length=542397
Score = 84.2 bits (92), Expect = 9e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867
||||| |||||||| | | |||||| || | ||||| ||| |||||||| || || ||
Sbjct 86180 GTAAAAACAACAGTCCTGGCAGGCATGTTCAAACCAATAGAGAAAGTTTCTGTAGCAAAA 86121
Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926
| ||||| || || |||| ||| | | |||||||||| | ||||| | ||| || |
Sbjct 86120 AGCACTTTGATCAAGTTTTCTTGGA-ACAGAATTTCAATCGTCTCTTTCAGAATTGGCAG 86062
Query 420927 TATACCAGAATGATG 420941
| ||||||||||||
Sbjct 86061 CAAACCAGAATGATG 86047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975692731713512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |