Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq81 107 1e-17 seq17 105 5e-17 seq55 100 2e-15 seq7 100 2e-15 >seq81 Length=223429 Score = 107 bits (118), Expect = 1e-17 Identities = 139/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 518175 |||||||||||||| ||| | | | || | | || |||| |||| || || || Sbjct 207988 GGTTCCACCACCCAAATCGTACACAG---CAATGA---CTCTGTCCTGGTCCTTGTCGAG 208041 Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||||| || | ||| ||||||||||| || || | || | | ||| || |||||||| Sbjct 208042 ACCATAGGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACACGGAGAACGTTCAGACCAGC 208101 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 |||| || ||||| || || ||||||| ||| || ||||| || || ||||| ||||| Sbjct 208102 AATTTGACCAGCATCCTTGGTTGCTTGTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGT 208161 Query 518296 AATAACGGCAT 518306 | ||||||| Sbjct 208162 GACGACGGCAT 208172 >seq17 Length=569005 Score = 105 bits (116), Expect = 5e-17 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 518175 |||||||||||||| ||| | | | || | | || |||| |||| || ||||| Sbjct 222461 GGTTCCACCACCCAAATCGTACACAG---CAATGA---CTCTGTCCTGGTCCTTGTCAAG 222514 Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||||| || | ||| ||||||||||| || || | || | | ||| || |||||||| Sbjct 222515 ACCATAGGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACACGGAGAACGTTCAGACCAGC 222574 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 |||| || ||||| || || ||||||| ||| || ||||| || || ||||| ||||| Sbjct 222575 AATTTGACCGGCATCCTTGGTTGCTTGTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGT 222634 >seq55 Length=331452 Score = 100 bits (110), Expect = 2e-15 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || || || || ||||||||||| | ||| | || | |||| | ||| Sbjct 245347 ACGAGACGGTTGTCGAAGTCCTCACCTCCCAAGTGAGTGTCACCAGCAGTAGACTTGACT 245406 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || || |||| | ||| || | ||||| |||||||||||| | ||| Sbjct 245407 TCGAAGATACCCTCCTCAATGGTCAAGAGGGAGACATCGAAGGTTCCACCACCAAGATCG 245466 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || || || || || ||||| || |||| |||||| Sbjct 245467 AAGATGAGAACGTTACGCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCG 245526 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || || || || |||| | || || ||||| ||||| || || || || Sbjct 245527 GCGGTGGGCTCGTTGATGATTCGGAGGACGTTGAGACCGGCAATCAGACCGGCGTCCTTG 245586 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || ||||| | || || ||| | || ||||| || ||||| | |||||| Sbjct 245587 GTAGCTTGACGCTGGGAGTCGGTGAAGTATGCGGGGACAGTGACAACGGC 245636 >seq7 Length=756160 Score = 100 bits (110), Expect = 2e-15 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 |||||||| || || || |||||||||||||| | || | || | |||| | ||| Sbjct 510245 ACAAGACGGTTGTCGAAGTCTTCACCTCCCAAGTGGGTGTCACCAGCAGTAGACTTGACT 510186 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || || |||| | || || | ||||| |||||||||||| | ||| Sbjct 510185 TCGAAGATACCCTCCTCAATGGTCAGGAGGGAGACATCGAAGGTTCCACCACCAAGATCG 510126 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || || || || || ||||| || |||| |||||| Sbjct 510125 AAGATGAGAACGTTACGCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCG 510066 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || || || || |||| | ||| || ||||| ||||| || || || || Sbjct 510065 GCGGTGGGCTCGTTGATGATTCGGAGAACGTTGAGACCGGCAATCAGACCGGCGTCCTTG 510006 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || ||||| | || || ||| | || ||||| || || || | |||||| Sbjct 510005 GTAGCTTGACGCTGGGAGTCGGTGAAGTATGCGGGGACGGTGACAACGGC 509956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780772081979884