Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq81 107 1e-17
seq17 105 5e-17
seq55 100 2e-15
seq7 100 2e-15
>seq81
Length=223429
Score = 107 bits (118), Expect = 1e-17
Identities = 139/191 (73%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 518175
|||||||||||||| ||| | | | || | | || |||| |||| || || ||
Sbjct 207988 GGTTCCACCACCCAAATCGTACACAG---CAATGA---CTCTGTCCTGGTCCTTGTCGAG 208041
Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235
|||||| || | ||| ||||||||||| || || | || | | ||| || ||||||||
Sbjct 208042 ACCATAGGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACACGGAGAACGTTCAGACCAGC 208101
Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295
|||| || ||||| || || ||||||| ||| || ||||| || || ||||| |||||
Sbjct 208102 AATTTGACCAGCATCCTTGGTTGCTTGTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGT 208161
Query 518296 AATAACGGCAT 518306
| |||||||
Sbjct 208162 GACGACGGCAT 208172
>seq17
Length=569005
Score = 105 bits (116), Expect = 5e-17
Identities = 132/180 (73%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 518175
|||||||||||||| ||| | | | || | | || |||| |||| || |||||
Sbjct 222461 GGTTCCACCACCCAAATCGTACACAG---CAATGA---CTCTGTCCTGGTCCTTGTCAAG 222514
Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235
|||||| || | ||| ||||||||||| || || | || | | ||| || ||||||||
Sbjct 222515 ACCATAGGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACACGGAGAACGTTCAGACCAGC 222574
Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295
|||| || ||||| || || ||||||| ||| || ||||| || || ||||| |||||
Sbjct 222575 AATTTGACCGGCATCCTTGGTTGCTTGTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGT 222634
>seq55
Length=331452
Score = 100 bits (110), Expect = 2e-15
Identities = 196/290 (68%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
|| ||||| || || || || ||||||||||| | ||| | || | |||| | |||
Sbjct 245347 ACGAGACGGTTGTCGAAGTCCTCACCTCCCAAGTGAGTGTCACCAGCAGTAGACTTGACT 245406
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| ||| | || || |||| | ||| || | ||||| |||||||||||| | |||
Sbjct 245407 TCGAAGATACCCTCCTCAATGGTCAAGAGGGAGACATCGAAGGTTCCACCACCAAGATCG 245466
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || || || || || || || || ||||| || |||| ||||||
Sbjct 245467 AAGATGAGAACGTTACGCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCG 245526
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|| || || || || || |||| | || || ||||| ||||| || || || ||
Sbjct 245527 GCGGTGGGCTCGTTGATGATTCGGAGGACGTTGAGACCGGCAATCAGACCGGCGTCCTTG 245586
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304
|| ||||| | || || ||| | || ||||| || ||||| | ||||||
Sbjct 245587 GTAGCTTGACGCTGGGAGTCGGTGAAGTATGCGGGGACAGTGACAACGGC 245636
>seq7
Length=756160
Score = 100 bits (110), Expect = 2e-15
Identities = 196/290 (68%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
|||||||| || || || |||||||||||||| | || | || | |||| | |||
Sbjct 510245 ACAAGACGGTTGTCGAAGTCTTCACCTCCCAAGTGGGTGTCACCAGCAGTAGACTTGACT 510186
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| ||| | || || |||| | || || | ||||| |||||||||||| | |||
Sbjct 510185 TCGAAGATACCCTCCTCAATGGTCAGGAGGGAGACATCGAAGGTTCCACCACCAAGATCG 510126
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || || || || || || || || ||||| || |||| ||||||
Sbjct 510125 AAGATGAGAACGTTACGCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCG 510066
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|| || || || || || |||| | ||| || ||||| ||||| || || || ||
Sbjct 510065 GCGGTGGGCTCGTTGATGATTCGGAGAACGTTGAGACCGGCAATCAGACCGGCGTCCTTG 510006
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304
|| ||||| | || || ||| | || ||||| || || || | ||||||
Sbjct 510005 GTAGCTTGACGCTGGGAGTCGGTGAAGTATGCGGGGACGGTGACAACGGC 509956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780772081979884
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |