Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7 244 1e-59 seq55 242 5e-59 seq12 150 2e-31 seq81 118 1e-21 seq17 116 5e-21 seq58 87.8 2e-12 >seq7 Length=756160 Score = 244 bits (270), Expect = 1e-59 Identities = 505/745 (68%), Gaps = 10/745 (1%) Strand=Plus/Minus Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA-AGGAGTCTCGAATCGA 7460 ||||| ||| ||| ||||| ||||| | |||||| | || | || | | |||| Sbjct 510287 TCTTTTTTAAATTTGCGTTTGAACTCAGCGACGAAGTGGTTGACAAGACGGTTG--TCGA 510230 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | |||||||| |||||||| || || || || || | |||||||| |||||||| | | Sbjct 510229 AGTCTTCACCTCCCAAGTGGGTGTCACCAGCAGTAGACTTGACTTCGAAGATACCCTCCT 510170 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| | | | || ||||| || || |||||||| || || || ||||| ||||| Sbjct 510169 CAATGGTCAGGAGGGAGACATCGAAGGTTCCACCACCAAGATCGAAGATGAGAACGTTAC 510110 Query 7581 TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 || | || ||||| ||||||||||| || ||||| || || || || || || | Sbjct 510109 GCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCGGCGGTGGGCTCGTTGA 510050 Query 7641 TAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 | || || ||| ||| || || ||||| | || || || || ||||| || || | Sbjct 510049 TGATTCGGAGAACGTTGAGACCGGCAATCAGACCGGCGTCCTTGGTAGCTTGACGCTGGG 509990 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACG 7760 | ||| | ||||| || ||||| || || || |||| |||| | ||| || || | Sbjct 509989 AGTCGGTGAAGTATGCGGGGACGGTGACAACGGCGTTGTTGACGGTTCCACCAAGGTATG 509930 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 || ||| | || ||| ||| | ||||| || || || || || | | || | Sbjct 509929 CCTCGGCGGTCTCACGCATCTTGACCAAGACCATGGAGGAGATTTCCTCGGGGGTGAATT 509870 Query 7821 GTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAA 7880 | ||| | || || || || || || || | | || || || || ||| | ||| | Sbjct 509869 GCTTCTTCTCGCCCTTGAACTCGACCTCGACGACTGGCTT-TC--CACCACGGTCGATGA 509813 Query 7881 CCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGA 7940 |||| | | | | ||||| ||| | ||||||| |||| | ||||| | || | Sbjct 509812 CCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGGTCGGCGAACTTGCGACCAA 509753 Query 7941 TAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCG 8000 | || ||||| || || || || ||||| ||||||||||| |||||||| || | Sbjct 509752 TGAGTCGCTTGGCGTCGAAGACGGTGTTGGCCGGGTTCATGGCGACCTGGTTCTTGGCGG 509693 Query 8001 CGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT 8060 | || ||||| ||||| || || || || || || ||| | || || || ||||| | Sbjct 509692 CATCTCCGATGAGACGCTCGGTA---TCGGTGAAGGCAACGAAGGAGGGCGTGGTTCGGT 509636 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || |||||||| ||||| || || | |||||| | | ||| || ||||| || | Sbjct 509635 TACCCTGGTCGTTGGCAATGATCTCAATGCGGTCATCTCTGAAGATACCCACGCAGGAGT 509576 Query 8121 ACGTTGTTCCTAAATCAATACCGAT 8145 |||| || || |||||||| || || Sbjct 509575 ACGTGGTACCCAAATCAATTCCTAT 509551 Score = 185 bits (204), Expect = 1e-41 Identities = 540/830 (65%), Gaps = 9/830 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| || || || || || || Sbjct 511226 TCATCCTCAGCCTTGTACTTCTCAGCCTCAGCCAGCATACGCTCGATCTCCTCCTTGGAG 511167 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||| || || | | |||| || | Sbjct 511166 AGACGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCAGTGCCCTTCTCGAGA 511107 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| |||||| || |||||||||||||| | || | |||||| || | Sbjct 511106 GCAGAGACGTTCATAATACCGTTGGCATCAACATCGAAGGTGACCTCAATTTGAGGAACA 511047 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||| ||||| || | || || |||| || | |||| ||| | Sbjct 511046 CCACGGGGCGCAGGTGGGATACCAGTAAGCTCGAACTTACCCAGCAGGTTGTTGTCCTTG 510987 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || ||||||| ||| ||| | || || || || Sbjct 510986 GTGCGTTGACGCTCACCCTCGTAGACTTGAATCAGCACACCGGGCTGGTTGTCAGAGAAG 510927 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | | ||||| | || || || || |||| || || | | |||| Sbjct 510926 GTGGAGAAGACCTCTGACTTCTTGGTGGGGATGGTGGTGTTTCGGGGGATGAGCTTGGTC 510867 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || ||||| ||| |||| || |||||||| || | || || | || | | Sbjct 510866 ATCTGGCCACCAGCAGTCTCGATACCGAGAGACAGTGGCGCAACATCGAGAAGGAGGATC 510807 Query 6989 TCTTGAACAGATTCG---TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | ||| | | || || | | ||||| || ||||| | || ||| Sbjct 510806 TCGTTGGTAGACTTGGAAGAGGTGTCTCCAGAGAGAATGGCAGCCTGGACGGCAGCACCG 510747 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || | || || ||||| || || || Sbjct 510746 TAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCG 510687 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | | ||| ||| | ||||| || || || || ||||| | ||||| || | Sbjct 510686 GTGATGAGCTTTTGGATTCTGGGGATACGGGTGGAACCTCCGACGAGGACGATCTCGTGA 510627 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACAT 7222 || || ||||| |||||||| | ||| ||| | | ||||| |||| | || || Sbjct 510626 ACCTTGGATTTGTCGATCTTGGCGTCAGCAAGGACTCTGTCGACGGGTTGGAGGGTAGAT 510567 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 ||||| | |||| || || ||||| || || |||||||| ||||| || ||||| Sbjct 510566 ---CGGAAGAGGTCCTGGCAGAGCTCCTCGAATCGAGCACGGGTGATGGAGGTGTAGAAG 510510 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || ||||| | || || || ||||||| || || || | ||||| | || Sbjct 510509 TCGATACCCTCGTAGAGAGAGTCGATCTCAATGGAGGTCTGGGCGGAGGAAGAGAGAGTA 510450 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 ||||| || ||||| || || || || | |||||| |||||||| | ||| Sbjct 510449 CGCTTAGCACGCTCGCAAGCAGTGCGGAGACGACGGAGGGCACGAGCGTT 510400 >seq55 Length=331452 Score = 242 bits (268), Expect = 5e-59 Identities = 468/689 (68%), Gaps = 6/689 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| |||||||| || || || || || | |||||||| |||||||| Sbjct 245359 TCGAAGTCCTCACCTCCCAAGTGAGTGTCACCAGCAGTAGACTTGACTTCGAAGATACCC 245418 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | || | || ||||| || || |||||||| || || || ||||| ||| Sbjct 245419 TCCTCAATGGTCAAGAGGGAGACATCGAAGGTTCCACCACCAAGATCGAAGATGAGAACG 245478 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 245479 TTACGCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCGGCGGTGGGCTCG 245538 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || ||| || || ||||| | || || || || ||||| || Sbjct 245539 TTGATGATTCGGAGGACGTTGAGACCGGCAATCAGACCGGCGTCCTTGGTAGCTTGACGC 245598 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||| | ||||| || ||||| || || || |||| |||| | ||| || Sbjct 245599 TGGGAGTCGGTGAAGTATGCGGGGACAGTGACAACGGCGTTGTTGACAGTTCCACCAAGG 245658 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||| | ||||| || || || || || | | Sbjct 245659 TATGACTCGGCGGTCTCACGCATCTTGACCAAGACCATGGAGGAGATTTCCTCGGGGGTG 245718 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || ||| | || || || || || || || | | || || |||||| | | Sbjct 245719 AATTGCTTCTTCTCGCCCTTGAACTCGACCTCGACGACTGGCTT---GCCAGCACGGTCG 245775 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | ||||| | | | | ||||| ||| | ||||||| |||| | ||||| | Sbjct 245776 ACGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGGTCGGCGAACTTGCGA 245835 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| || ||||| || || || || ||||| ||||||||||| |||||||| Sbjct 245836 CCGATGAGTCGCTTGGCGTCGAAGACAGTGTTGGCCGGGTTCATGGCGACCTGGTTCTTG 245895 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || || || || || || ||| | || || || ||| Sbjct 245896 GCGGCATCTCCGATGAGACGCTCGGTA---TCGGTGAAGGCAACGAAGGAGGGTGTGGTT 245952 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| ||||| || || | |||||| | | ||| || ||||| Sbjct 245953 CGGTTACCCTGGTCGTTGGCAATGATCTCAATGCGGTCATCTCTGAAGATACCCACGCAG 246012 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 || ||||| || || |||||||| || || Sbjct 246013 GAGTACGTGGTACCCAAATCAATTCCTAT 246041 >seq12 Length=680961 Score = 150 bits (166), Expect = 2e-31 Identities = 347/518 (67%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| || || ||||||||||| | | ||| || | |||||||| | ||| Sbjct 587156 AGGTCCTCGAATCGGGCACGGGTAATCTGGGCGTTGAAGTCCTCTCCGTCGTAAAGGGAA 587097 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||| || ||||| || ||| ||| | |||| ||| || ||||| || | Sbjct 587096 TCAATCTCAACAGTGGTTTGAGCACCGTT--AGAAAGGGTTCTCTTAGCACGCTCGCAAG 587039 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTA-TGTTTACGT 7420 | ||||| | ||| || || ||||| |||| || || || ||||| | ||| | Sbjct 587038 CAGTTCGGAGACGTCGGAGAGCACGGGGGTCGTTTGACATGTCCTTCTTGGTCTTTCTGA 586979 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || |||| |||||| ||| | | | ||||| || | ||| |||||||| Sbjct 586978 AGAATTCCTTCTT-GAAGTGCTCAAGCAAGTTGGTGTCGAAGTCCTGACCTCCCAAGTGG 586920 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| || | ||| || | ||||| | | |||||| Sbjct 586919 GTGTCACCGGCGGTAGCCTTGACGGTGAAAACACCACCCTGGATGTTAAGAAGGGAAACA 586860 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || || |||||||| || || | || | || || || | || || |||| Sbjct 586859 TCGAAAGTTCCACCACCAAGATCGTAGATCAACACATTGCGCTCCTTGT---TGGTCTTT 586803 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||||||||| ||||| || || || || || || |||||||| || | Sbjct 586802 CCGGCACCAAGACCGTACGCAATAGCGGCAGCAGTAGGCTCGTTGATAATACGGAGGACG 586743 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | ||||| || || ||||| || || ||||| ||||| Sbjct 586742 TTAAGACCGGCAATGGCACCAGCATCCTTTGTTGCTTGACGCTGGTTGTCGTTGAAGTAA 586683 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 |||||||| || | ||| || | | ||| ||||| || Sbjct 586682 GCCGGGACAGTGATGACAGCCTTAGAGACCTTCTTGCC 586645 >seq81 Length=223429 Score = 118 bits (130), Expect = 1e-21 Identities = 201/283 (71%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||| | ||||| || || | ||| Sbjct 207898 ATCGAAATCCTCACCACCCAAGTGAGTGTCACCATTGGTTGACTTGACCTCGAACACACC 207957 Query 7516 TCCTTCAATGTTTA-ACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||| | | | |||| | | ||| || || |||||||||| || | | || Sbjct 207958 --CTTCTGGATCTCGAGAACGGAGATATCGAAGGTTCCACCACCCAAATCGTACAC-AGC 208014 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | || ||| | || ||| |||||||| || |||| ||| || || ||||| Sbjct 208015 AATGAC---TCT--GTCCTGGTCCTTGTCGAGACCATAGGCGAGAGCGGCAGCAGTTGGC 208069 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTT 7691 || || | || ||| ||| |||||| |||||||| ||| | ||||| || || |||| Sbjct 208070 TCGTTGACAACACGGAGAACGTTCAGACCAGCAAT--TTGACCAGCATCCTTGGTTGCTT 208127 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 ||||||| || ||||| |||||||| ||||| || ||||| || Sbjct 208128 GTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGTGACGACGGC 208170 >seq17 Length=569005 Score = 116 bits (128), Expect = 5e-21 Identities = 202/285 (71%), Gaps = 14/285 (5%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||| | ||||| || || | ||| Sbjct 222371 ATCGAAATCCTCACCACCCAAGTGAGTGTCACCATTGGTTGACTTGACCTCGAACACACC 222430 Query 7516 TCCTTCAATGTTTA-ACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||| | | | |||| | | ||| || || |||||||||| || | | || Sbjct 222431 --CTTCTGGATCTCGAGAACGGAGATATCGAAGGTTCCACCACCCAAATCGTACAC-AGC 222487 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | || ||| | || ||| || ||||| || |||| ||| || || ||||| Sbjct 222488 AATGAC---TCT--GTCCTGGTCCTTGTCAAGACCATAGGCGAGAGCGGCAGCAGTTGGC 222542 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTT 7691 || || | || ||| ||| |||||| |||||||| ||| | ||||| || || |||| Sbjct 222543 TCGTTGACAACACGGAGAACGTTCAGACCAGCAAT--TTGACCGGCATCCTTGGTTGCTT 222600 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 ||||||| || ||||| |||||||| ||||| || ||||| |||| Sbjct 222601 GTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGTGACGACAGCGT 222645 >seq58 Length=324706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| ||||||||| |||| | |||||||| || ||||| || | | || || | | Sbjct 93019 GTGTTCTTGGGGTTCGTGGCAGCCTGGTTCTTGGCTGCGTCTCCTACTAATCGCTCCTCA 92960 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | || || || || || ||||| || ||| || ||||||||||| | | |||| Sbjct 92959 T---CGGTGAAGGCCACATATGATGGTGTTATTCTGTTTCCTTGGTCGTTGACTAGAATT 92903 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCG 8143 || || | | || ||| || |||||||| || || || ||||| | ||| |||||| Sbjct 92902 TCGACTTTGCCCTTCTGCATCACACCGACGCAGGAGTATGTAGTTCCAAGATCGATACCG 92843 Query 8144 AT 8145 || Sbjct 92842 AT 92841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635124749691760