Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq181 111 2e-19 seq57 105 8e-18 >seq181 Length=52435 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 || |||||||| ||||||| ||||| || | |||||||||||| | || || || | Sbjct 3672 ATCGTTCATGAACATGGTGGCCAGGTGTACATGGATGGTGCAAATATGAACGCCCAAATC 3613 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACA 159729 ||||| || |||| ||| || ||||| || ||||| ||| | || ||||| Sbjct 3612 GGTCTTTGCTCTCCGGGTGAGATTGGAGCCGATGTCTGCCATCTCAACCTTCACAAGACT 3553 Query 159730 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 |||||||| || ||||| || || |||||||| || ||||| ||||||||| Sbjct 3552 TTCTGTATCCCCCATGGTGGCGGTGGTCCTGGTGTTGGTCCAATTGGTGTA 3502 >seq57 Length=326045 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 || |||||| | ||||||| ||||| || | |||||||||||| | || || || | Sbjct 58141 ATCGTTCATCAACATGGTGGCCAGGTGTACATGGATGGTGCAAATATGAACGCCCAAATC 58200 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACA 159729 ||||| || |||| ||| || ||||| || ||||| ||| | || ||||| Sbjct 58201 GGTCTTTGCTCTCCGGGTGAGATTGGAGCCGATGTCTGCCATCTCAACCTTCACAAGACT 58260 Query 159730 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 |||||||| || ||||| || || |||||||| || ||||| ||||||||| Sbjct 58261 TTCTGTATCCCCCATGGTGGCGGTGGTCCTGGTGTTGGTCCAATTGGTGTA 58311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588043746451040