Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq102 156 9e-33
seq38 156 9e-33
seq7 149 1e-30
seq96 143 6e-29
seq153 98.7 2e-15
seq173 87.8 4e-12
>seq102
Length=175646
Score = 156 bits (172), Expect = 9e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||||||||| ||||| || || || |||||||||| ||| || | || ||||||
Sbjct 56156 ACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCG 56215
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || ||||| ||||| || || || ||||| ||||||||
Sbjct 56216 AGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGG 56275
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||| || ||||||||||| ||| ||||| |||||||| | |||||
Sbjct 56276 ATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTG 56335
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 56336 CCCGTGAGGGTCTTGACGAAGATCTGCAT 56364
>seq38
Length=423541
Score = 156 bits (172), Expect = 9e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||||||||| ||||| || || || |||||||||| ||| || | || ||||||
Sbjct 319968 ACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCG 320027
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || ||||| ||||| || || || ||||| ||||||||
Sbjct 320028 AGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGG 320087
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||| || ||||||||||| ||| ||||| |||||||| | |||||
Sbjct 320088 ATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTG 320147
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 320148 CCCGTGAGGGTCTTGACGAAGATCTGCAT 320176
>seq7
Length=756160
Score = 149 bits (164), Expect = 1e-30
Identities = 161/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||| | ||| || || || || ||||| || ||||| |||| |||| |||| ||||| |
Sbjct 415639 AACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCGACCATCCT 415581
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
|||| ||||| || ||||| || || |||||||| || || ||||||||||| || ||||
Sbjct 415580 CGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTT 415521
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
|||| ||| |||||||| || || || ||||| ||||||||| | |||| ||||
Sbjct 415520 GAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCCACTTCCAATGTAATTGTCT 415461
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || | ||| || ||||| | ||||||
Sbjct 415460 TGCCGGTGAGAGTCTTGACGAAGATTTGCAT 415430
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||| ||||| || || || ||||| || | ||||| | || || ||
Sbjct 415126 ACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCA 415067
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || ||||| ||||| ||||||||||| || ||||||||
Sbjct 415066 AGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGG 415007
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||| || ||||| || | |||||
Sbjct 415006 ATCTTGGACTTGACATTGTCGATGGTGTCGGAGGATTCAACCTCAAGAGTGATGGTCTTG 414947
Query 195112 CCTGT 195116
|| ||
Sbjct 414946 CCGGT 414942
>seq96
Length=182788
Score = 143 bits (158), Expect = 6e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||| | ||| ||||| || || ||||| || ||||| |||| |||| |||| ||||| |
Sbjct 166646 AACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCGACCATCCT 166588
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
|||||||||| || || || || || |||||||| || || ||||||||||| || ||||
Sbjct 166587 CGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTT 166528
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
|||| ||| |||||||| || || || ||||| |||||||| | || | ||||
Sbjct 166527 GAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCT 166468
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || | ||| || ||||| | ||||||
Sbjct 166467 TGCCGGTGAGAGTCTTGACGAAGATTTGCAT 166437
>seq153
Length=80566
Score = 98.7 bits (108), Expect = 2e-15
Identities = 192/281 (68%), Gaps = 2/281 (1%)
Strand=Plus/Minus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
||||||||| | |||| | ||||||| ||||||||| | || | | || || || |||
Sbjct 60665 TTCTACGCCCTGTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACGGAGACTGG 60606
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
| || | || ||||| ||| || || || | || ||||| || |||||||||
Sbjct 60605 ACTCTGATGTGCCCCAACGAATGCCCCGGCCTGGCAGACGTTTACGGGGATGAGTTCGAG 60546
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767
|||| || || | |||||| | ||| || ||| | | || | | ||||| || |
Sbjct 60545 GCTCTCTACGAGAAATACGAGAGAGAAGGTAAGGGTCGCAAGACTA-TCAAGGCTCAGAA 60487
Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827
||| ||| | |||||| | |||||| |||| || | ||||| || |||||
Sbjct 60486 ACTCTGGTACTCCATCCTCGAGGCCCAAACCGAGACCGGGAACCCCTTCATGCTCTACAA 60427
Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868
|||||| | || ||||| |||||||||||| | ||||
Sbjct 60426 GGATGCTTGCAACCGAAAGAGCAACCAGAAGAACCTGGGAA 60386
>seq173
Length=62178
Score = 87.8 bits (96), Expect = 4e-12
Identities = 112/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 32299 CTCAAGCATATGGTGACAGACAAGATGCATGCGAGAGCGACTGGA-AAGATCCAAAGTCT 32357
|||||||| ||||| |||||||||||| ||||| | | ||| | | | || |||
Sbjct 15419 CTCAAGCACATGGTTCAAGACAAGATGCACTCGAGATCTAGAGGACCACGTGC-AATTCT 15477
Query 32358 CACTCGTCAACCAACTGAGGGGCGATCTAGAAACGGGGGCCTTAAAATCGGATCGATGGA 32417
||||| ||||| || || || ||||| ||| |||| || |||| | | ||| ||||||
Sbjct 15478 TACTCGGCAACCTACAGAAGGCCGATCGAGAGACGGAGGTCTTAGATTGGGAGAGATGGA 15537
Query 32418 AAGGGATTGTCTTGTGGGGAATGGAGCGACTC 32449
||| |||||||| | | | | ||||||| ||
Sbjct 15538 AAGAGATTGTCTGATCGCGTACGGAGCGAGTC 15569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109467185753738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |