Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq102 93.3 3e-14 seq38 93.3 3e-14 seq96 87.8 1e-12 >seq102 Length=175646 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || |||||| | || | || || || || || ||||| || Sbjct 56174 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAG 56233 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||| |||||||| ||||| |||||| Sbjct 56234 ATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTG 56293 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| || || || |||||||| ||||| || Sbjct 56294 TCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 56353 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 56354 AAGATCTGCAT 56364 >seq38 Length=423541 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || |||||| | || | || || || || || ||||| || Sbjct 319986 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAG 320045 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||| |||||||| ||||| |||||| Sbjct 320046 ATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTG 320105 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| || || || |||||||| ||||| || Sbjct 320106 TCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 320165 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 320166 AAGATCTGCAT 320176 >seq96 Length=182788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| ||||| | || ||| || || ||||| ||||| || | | |||| |||| || Sbjct 166646 AACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTC 166587 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || || ||||| || || | || | || ||||| || Sbjct 166586 GAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTG 166527 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||||||| | |||| || || ||| || || | || || || || Sbjct 166526 AATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCTT 166467 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| || ||||| |||||| Sbjct 166466 GCCGGTGAGAGTCTTGACGAAGATTTGCATA 166436 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| ||||| || ||| | || |||| || Sbjct 166418 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTC 166359 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || || || || || ||||| || || | || | ||||||||||| Sbjct 166358 GAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGGGGAATACCCTCCTTGTCTTG 166299 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| ||||| || | ||||| ||| || || || |||| ||| |||| Sbjct 166298 GATCTTCGACTTGAC--AT--TGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTGATGG 166243 Query 34948 TTTTTCCCGTGAGAGTCTTCACAA 34971 | || || ||||| ||||| |||| Sbjct 166242 TCTTGCCGGTGAGGGTCTTGACAA 166219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629588137392