Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq102 93.3 3e-14
seq38 93.3 3e-14
seq96 87.8 1e-12
>seq102
Length=175646
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || |||||| | || | || || || || || ||||| ||
Sbjct 56174 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAG 56233
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || ||||||||||| | || | ||| |||||||| ||||| ||||||
Sbjct 56234 ATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTG 56293
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | ||| || || || |||||||| ||||| ||
Sbjct 56294 TCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 56353
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 56354 AAGATCTGCAT 56364
>seq38
Length=423541
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || |||||| | || | || || || || || ||||| ||
Sbjct 319986 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAG 320045
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || ||||||||||| | || | ||| |||||||| ||||| ||||||
Sbjct 320046 ATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTTGACATTG 320105
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | ||| || || || |||||||| ||||| ||
Sbjct 320106 TCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 320165
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 320166 AAGATCTGCAT 320176
>seq96
Length=182788
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| ||||| | || ||| || || ||||| ||||| || | | |||| |||| ||
Sbjct 166646 AACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCATCCTC 166587
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || ||||| || || ||||| || || | || | || ||||| ||
Sbjct 166586 GAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTG 166527
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| ||||||| | |||| || || ||| || || | || || || ||
Sbjct 166526 AATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCTT 166467
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||||||||| || ||||| ||||||
Sbjct 166466 GCCGGTGAGAGTCTTGACGAAGATTTGCATA 166436
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| || || ||||| ||||| ||||| || ||| | || |||| ||
Sbjct 166418 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTC 166359
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || || || || || || || ||||| || || | || | |||||||||||
Sbjct 166358 GAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGGGGAATACCCTCCTTGTCTTG 166299
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
|||||| ||||| || | ||||| ||| || || || |||| ||| ||||
Sbjct 166298 GATCTTCGACTTGAC--AT--TGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTGATGG 166243
Query 34948 TTTTTCCCGTGAGAGTCTTCACAA 34971
| || || ||||| ||||| ||||
Sbjct 166242 TCTTGCCGGTGAGGGTCTTGACAA 166219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324629588137392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |