Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-15 seq5 100 2e-15 seq12 96.9 3e-14 seq96 91.5 1e-12 >seq7 Length=756160 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | || |||||| ||| ||||| || ||||| || | | |||| Sbjct 415647 AGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGG--ATGTTGTAGTCGGACAAGGTTC 415590 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || ||||| || || || ||||| || | ||| ||||| || ||||| |||| Sbjct 415589 GACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGGGAATGCCTT 415530 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | ||||||||||| ||| ||| || || || ||||| | | || | || ||| | Sbjct 415529 CCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAG-GATTCCACTTCCAAT 415471 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || || || ||||| || ||||| ||||||||| Sbjct 415470 GTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 415429 >seq5 Length=878710 Score = 100 bits (110), Expect = 2e-15 Identities = 116/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | | | || || || ||||| || || || || || ||| || Sbjct 589081 GTTGGGCAAGAAGGTCTCTAAGGCTGTCATCACTGTCCCGGCTTACTTCAACGACAACCA 589140 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||| || |||||||| ||||| || ||||| || || ||||||||||| Sbjct 589141 GCGTCAAGCTACAAAGGATGCTGGTGCCATTGCCGGCCTTAACGTCCTCCGTATTATCAA 589200 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||||||||| || |||| || || |||| Sbjct 589201 CGAGCCTACTGCTGCCGCTATTGCCTACGGTCTTG 589235 >seq12 Length=680961 Score = 96.9 bits (106), Expect = 3e-14 Identities = 115/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | | | || || || ||||| || || || || || ||| || Sbjct 586641 GTTGGGCAAGAAGGTCTCTAAGGCTGTCATCACTGTCCCGGCTTACTTCAACGACAACCA 586700 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||||| || || |||||||| ||||| || ||||| || || ||||||||||| Sbjct 586701 GCGTCAAGCAACAAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATTATCAA 586760 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||||||||| || |||| || || |||| Sbjct 586761 CGAGCCTACTGCTGCCGCTATTGCGTACGGTCTTG 586795 >seq96 Length=182788 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | || || ||| ||| ||||| || ||||| || | | |||| Sbjct 166654 AGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGG--ATGTTGTAGTCGGACAAGGTTC 166597 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || || || || || |||||||| || | ||| ||||| || ||||| |||| Sbjct 166596 GACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCCTT 166537 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | ||||||||||| ||| ||| || || || ||||| | | || | || ||| | Sbjct 166536 CCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAG-GACTCCACTTCCAAT 166478 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || || ||||| || ||||| ||||||||| Sbjct 166477 GTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 166436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029242375106860