Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq7 100 2e-15
seq5 100 2e-15
seq12 96.9 3e-14
seq96 91.5 1e-12
>seq7
Length=756160
Score = 100 bits (110), Expect = 2e-15
Identities = 158/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| || | || |||||| ||| ||||| || ||||| || | | ||||
Sbjct 415647 AGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGG--ATGTTGTAGTCGGACAAGGTTC 415590
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| || ||||| || || || ||||| || | ||| ||||| || ||||| ||||
Sbjct 415589 GACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGGGAATGCCTT 415530
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| ||||||||||| ||| ||| || || || ||||| | | || | || ||| |
Sbjct 415529 CCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAG-GATTCCACTTCCAAT 415471
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| || || || || ||||| || ||||| |||||||||
Sbjct 415470 GTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 415429
>seq5
Length=878710
Score = 100 bits (110), Expect = 2e-15
Identities = 116/155 (75%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | | | || || || ||||| || || || || || ||| ||
Sbjct 589081 GTTGGGCAAGAAGGTCTCTAAGGCTGTCATCACTGTCCCGGCTTACTTCAACGACAACCA 589140
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||||| || |||||||| ||||| || ||||| || || |||||||||||
Sbjct 589141 GCGTCAAGCTACAAAGGATGCTGGTGCCATTGCCGGCCTTAACGTCCTCCGTATTATCAA 589200
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| ||||||||||| || |||| || || ||||
Sbjct 589201 CGAGCCTACTGCTGCCGCTATTGCCTACGGTCTTG 589235
>seq12
Length=680961
Score = 96.9 bits (106), Expect = 3e-14
Identities = 115/155 (74%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | | | || || || ||||| || || || || || ||| ||
Sbjct 586641 GTTGGGCAAGAAGGTCTCTAAGGCTGTCATCACTGTCCCGGCTTACTTCAACGACAACCA 586700
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
|||||||| || || |||||||| ||||| || ||||| || || |||||||||||
Sbjct 586701 GCGTCAAGCAACAAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATTATCAA 586760
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| ||||||||||| || |||| || || ||||
Sbjct 586761 CGAGCCTACTGCTGCCGCTATTGCGTACGGTCTTG 586795
>seq96
Length=182788
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| || | || || ||| ||| ||||| || ||||| || | | ||||
Sbjct 166654 AGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGG--ATGTTGTAGTCGGACAAGGTTC 166597
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| || || || || || |||||||| || | ||| ||||| || ||||| ||||
Sbjct 166596 GACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCCTT 166537
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| ||||||||||| ||| ||| || || || ||||| | | || | || ||| |
Sbjct 166536 CCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAG-GACTCCACTTCCAAT 166478
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | || || || || ||||| || ||||| |||||||||
Sbjct 166477 GTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 166436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029242375106860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |