Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq7 125 5e-23
seq96 120 2e-21
seq17 98.7 6e-15
seq102 93.3 3e-13
seq38 93.3 3e-13
seq12 86.0 4e-11
>seq7
Length=756160
Score = 125 bits (138), Expect = 5e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || ||| ||| || | || || || | | ||
Sbjct 415651 ACGAAGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 415592
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| ||| || |||||||| ||||| ||||| |||||||||||||| || ||||| ||
Sbjct 415591 TCGACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGGGAATGCC 415532
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|||||| |||||||||||| |||||| || || ||||| | | | ||| |
Sbjct 415531 TTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCCACTTCCAA 415472
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || |||||||||||||| ||||| |||||
Sbjct 415471 TGTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTG 415433
Score = 98.7 bits (108), Expect = 6e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || |||||||| ||||| || || |||||||||||||||||||| || || |||||
Sbjct 415357 ATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGAGGGATACCCTCCTT 415298
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|||||| ||||| |||||| || || ||||||| | || ||||| ||
Sbjct 415297 GTCTTGGATCTTCGACTTGACATTGTCGATGGTATCAGAAGATTCGACCTCGAGGGTGAT 415238
Query 480737 AGTTTTACCGGTGAGAGTCTTAAC 480760
|| || |||||||| ||||| ||
Sbjct 415237 GGTCTTGCCGGTGAGGGTCTTGAC 415214
Score = 91.5 bits (100), Expect = 1e-12
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| ||||| || || ||| || || | || || |||| |||||
Sbjct 415139 ACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 415080
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| || ||||||||||| || || || || |||||||| || || |||||||| ||
Sbjct 415079 GCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCGGGAGGAATGCC 415020
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||| ||||| |||||| || || || || | | | | |||||
Sbjct 415019 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGATTCAACCTCAAG 414960
Query 480731 GGTAATAGTTTTACCGGTGA 480750
|| || || || |||||||
Sbjct 414959 AGTGATGGTCTTGCCGGTGA 414940
>seq96
Length=182788
Score = 120 bits (132), Expect = 2e-21
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || ||| ||| || | || || || | | ||
Sbjct 166658 ACGAAGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 166599
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| ||| || || ||||| ||||||||||| |||||||||||||| || ||||| ||
Sbjct 166598 TCGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCC 166539
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||| |||||||||||| |||||| || || ||||| | | | | || |||
Sbjct 166538 TTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCACTTCCAA 166479
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || |||||||||||||| ||||| |||||
Sbjct 166478 -TGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTG 166440
Score = 98.7 bits (108), Expect = 6e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || |||||||| ||||| || || ||||||||||||||||| ||||| || |||||
Sbjct 166364 ATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGGGGAATACCCTCCTT 166305
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|||||| ||||| |||||| || || || |||| | | || ||||| ||
Sbjct 166304 GTCTTGGATCTTCGACTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTGAT 166245
Query 480737 AGTTTTACCGGTGAGAGTCTTAAC 480760
|| || |||||||| ||||| ||
Sbjct 166244 GGTCTTGCCGGTGAGGGTCTTGAC 166221
Score = 86.0 bits (94), Expect = 4e-11
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| ||||| || || ||| || || | || || || | |||||
Sbjct 166146 ACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 166087
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| || ||||||||||| || || || || |||||||| || || || ||||| ||
Sbjct 166086 GCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCCGGGGGAATGCC 166027
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||| ||||| |||||| || || || |||| | | | |||||
Sbjct 166026 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCAAG 165967
Query 480731 GGTAATAGTTTTACCGGTGA 480750
|| || || || |||||||
Sbjct 165966 AGTGATGGTCTTGCCGGTGA 165947
>seq17
Length=569005
Score = 98.7 bits (108), Expect = 6e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
||||| || || || || || || |||||||| |||||||| || ||||| || ||||
Sbjct 222634 ACTGTCCCTGCCTACTTCAACGACTCTCAACGACAAGCAACCAAGGATGCCGGTCAAATT 222575
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|| ||||| || ||| | ||| || | || || ||||| || ||||| || || ||||||
Sbjct 222574 GCTGGTCTGAACGTTCTCCGTGTTGTCAACGAGCCAACTGCTGCCGCTCTCGCCTATGGT 222515
Query 474866 CTTGATAAG 474874
||||| |||
Sbjct 222514 CTTGACAAG 222506
>seq102
Length=175646
Score = 93.3 bits (102), Expect = 3e-13
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| |||||||| || || || || || ||||| || || || || || |||||||||
Sbjct 56210 TCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTG 56269
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736
||||| ||||| ||||||| ||||| || |||| | | | |||||||| ||
Sbjct 56270 TCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCA-CCTCAAGGGTGAT 56328
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || ||||| ||||| ||||| || ||
Sbjct 56329 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 56361
>seq38
Length=423541
Score = 93.3 bits (102), Expect = 3e-13
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| |||||||| || || || || || ||||| || || || || || |||||||||
Sbjct 320022 TCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTG 320081
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736
||||| ||||| ||||||| ||||| || |||| | | | |||||||| ||
Sbjct 320082 TCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCA-CCTCAAGGGTGAT 320140
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || ||||| ||||| ||||| || ||
Sbjct 320141 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 320173
>seq12
Length=680961
Score = 86.0 bits (94), Expect = 4e-11
Identities = 112/154 (73%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 474717 TTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775
|||| ||||||| | || | || || || ||||| || || || || || || ||
Sbjct 586642 TTGGGCAAGAAGGTCTCTAAGGCTGTCATCACTGTCCCGGCTTACTTCAACGACAACCAG 586701
Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835
||||||||||| || ||||| || ||||| |||||||| || | |||||||| ||
Sbjct 586702 CGTCAAGCAACAAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATTATCAAC 586761
Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869
|| || || || ||||| |||| || |||||||
Sbjct 586762 GAGCCTACTGCTGCCGCTATTGCGTACGGTCTTG 586795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268135704620072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |