Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7 125 5e-23 seq96 120 2e-21 seq17 98.7 6e-15 seq102 93.3 3e-13 seq38 93.3 3e-13 seq12 86.0 4e-11 >seq7 Length=756160 Score = 125 bits (138), Expect = 5e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || | || || || | | || Sbjct 415651 ACGAAGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 415592 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || |||||||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 415591 TCGACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGGGAATGCC 415532 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||| |||||||||||| |||||| || || ||||| | | | ||| | Sbjct 415531 TTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCCACTTCCAA 415472 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||||||||| ||||| ||||| Sbjct 415471 TGTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTG 415433 Score = 98.7 bits (108), Expect = 6e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||| || || |||||||||||||||||||| || || ||||| Sbjct 415357 ATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGAGGGATACCCTCCTT 415298 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| || || ||||||| | || ||||| || Sbjct 415297 GTCTTGGATCTTCGACTTGACATTGTCGATGGTATCAGAAGATTCGACCTCGAGGGTGAT 415238 Query 480737 AGTTTTACCGGTGAGAGTCTTAAC 480760 || || |||||||| ||||| || Sbjct 415237 GGTCTTGCCGGTGAGGGTCTTGAC 415214 Score = 91.5 bits (100), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| || || ||| || || | || || |||| ||||| Sbjct 415139 ACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 415080 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||||||||| || || || || |||||||| || || |||||||| || Sbjct 415079 GCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCGGGAGGAATGCC 415020 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| |||||| || || || || | | | | ||||| Sbjct 415019 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGATTCAACCTCAAG 414960 Query 480731 GGTAATAGTTTTACCGGTGA 480750 || || || || ||||||| Sbjct 414959 AGTGATGGTCTTGCCGGTGA 414940 >seq96 Length=182788 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || | || || || | | || Sbjct 166658 ACGAAGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 166599 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || || ||||| ||||||||||| |||||||||||||| || ||||| || Sbjct 166598 TCGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCC 166539 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| |||||||||||| |||||| || || ||||| | | | | || ||| Sbjct 166538 TTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCACTTCCAA 166479 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||||||||| ||||| ||||| Sbjct 166478 -TGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTG 166440 Score = 98.7 bits (108), Expect = 6e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||| || || ||||||||||||||||| ||||| || ||||| Sbjct 166364 ATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGATCAGGGGGAATACCCTCCTT 166305 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| || || || |||| | | || ||||| || Sbjct 166304 GTCTTGGATCTTCGACTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTGAT 166245 Query 480737 AGTTTTACCGGTGAGAGTCTTAAC 480760 || || |||||||| ||||| || Sbjct 166244 GGTCTTGCCGGTGAGGGTCTTGAC 166221 Score = 86.0 bits (94), Expect = 4e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| || || ||| || || | || || || | ||||| Sbjct 166146 ACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 166087 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||||||||| || || || || |||||||| || || || ||||| || Sbjct 166086 GCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCCGGGGGAATGCC 166027 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| |||||| || || || |||| | | | ||||| Sbjct 166026 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCAAG 165967 Query 480731 GGTAATAGTTTTACCGGTGA 480750 || || || || ||||||| Sbjct 165966 AGTGATGGTCTTGCCGGTGA 165947 >seq17 Length=569005 Score = 98.7 bits (108), Expect = 6e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || || |||||||| |||||||| || ||||| || |||| Sbjct 222634 ACTGTCCCTGCCTACTTCAACGACTCTCAACGACAAGCAACCAAGGATGCCGGTCAAATT 222575 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| || ||| | ||| || | || || ||||| || ||||| || || |||||| Sbjct 222574 GCTGGTCTGAACGTTCTCCGTGTTGTCAACGAGCCAACTGCTGCCGCTCTCGCCTATGGT 222515 Query 474866 CTTGATAAG 474874 ||||| ||| Sbjct 222514 CTTGACAAG 222506 >seq102 Length=175646 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || || ||||| || || || || || ||||||||| Sbjct 56210 TCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTG 56269 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| ||||||| ||||| || |||| | | | |||||||| || Sbjct 56270 TCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCA-CCTCAAGGGTGAT 56328 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || ||||| ||||| ||||| || || Sbjct 56329 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 56361 >seq38 Length=423541 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || || ||||| || || || || || ||||||||| Sbjct 320022 TCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTG 320081 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| ||||||| ||||| || |||| | | | |||||||| || Sbjct 320082 TCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGACTCCA-CCTCAAGGGTGAT 320140 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || ||||| ||||| ||||| || || Sbjct 320141 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 320173 >seq12 Length=680961 Score = 86.0 bits (94), Expect = 4e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 474717 TTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775 |||| ||||||| | || | || || || ||||| || || || || || || || Sbjct 586642 TTGGGCAAGAAGGTCTCTAAGGCTGTCATCACTGTCCCGGCTTACTTCAACGACAACCAG 586701 Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835 ||||||||||| || ||||| || ||||| |||||||| || | |||||||| || Sbjct 586702 CGTCAAGCAACAAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATTATCAAC 586761 Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 || || || || ||||| |||| || ||||||| Sbjct 586762 GAGCCTACTGCTGCCGCTATTGCGTACGGTCTTG 586795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268135704620072