Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq15 122 3e-22 seq75 116 1e-20 seq16 93.3 1e-13 seq68 87.8 5e-12 seq64 84.2 6e-11 >seq15 Length=607589 Score = 122 bits (134), Expect = 3e-22 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 133432 CGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCG 133491 |||| ||||||| ||||| ||||| | |||||||| | | |||||| ||||||||| Sbjct 331210 CGAAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCAGTCAGATGGATTCAGGACAAGAA 331151 Query 133492 TGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGG 133551 | | || || |||||||| || ||||||| || || || || ||||||||||| Sbjct 331150 CTCTACCTTCGCCCAACGTCTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGG 331091 Query 133552 TGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTT 133610 | | || ||| |||||||| ||| | || ||||| ||| | | || ||||| || | Sbjct 331090 TTCCTT-TGCGTCTATTTTCTGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCT 331032 Query 133611 CTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | ||||| | || || | || |||| ||||||||||| ||||| Sbjct 331031 CAAACGAGTTGATCTCGCGTGATGAGGGCCTTCACACCGACTTTGC 330986 >seq75 Length=245354 Score = 116 bits (128), Expect = 1e-20 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 133432 CGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCG 133491 |||| |||| || ||||| ||||| | |||||||| | | |||||| ||||||||| Sbjct 39008 CGAAGTTCCCTGCATTAAGAAGAAGGCCGACTGGGCAGTCAGATGGATTCAGGACAAGAA 39067 Query 133492 TGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGG 133551 | | || || |||||||| || ||||||| || || || || ||||||||||| Sbjct 39068 CTCTACCTTCGCCCAACGTCTCGTGGCATTTGCTGCGGTCGAAGGTATCTTTTTCAGTGG 39127 Query 133552 TGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTT 133610 | | || ||| |||||||| ||| | || ||||| ||| | | || ||||| || | Sbjct 39128 TTCCTT-TGCGTCTATTTTCTGGTTGAAGAAGCGAGGTCTGATGCCCGGACTCACCTTCT 39186 Query 133611 CTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | ||||| | || || | || |||| ||||||||||| ||||| Sbjct 39187 CAAACGAGTTGATCTCGCGTGATGAGGGCCTTCACACCGACTTTGC 39232 >seq16 Length=584397 Score = 93.3 bits (102), Expect = 1e-13 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| ||| ||| || || || ||| | ||||| || | || | | | Sbjct 121622 ATGAGCCCACAGATATCACATACGTGAACTCTGAAGGCATCCGAAACCTCGAACAATCTC 121563 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || ||||| ||||| ||||||||||||||||||||||| |||||| Sbjct 121562 TCCTTCAAGAAAGCAGCGGCACCATGTGAGATCATACAATCACGCTCCATTTCTCCGAAA 121503 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || |||||||| || | || | ||| || | || || | || ||| | || ||| Sbjct 121502 CGTAGACCACCGTCTCTTGCACGACCTTCAACTGGTTGTCTTGTCAGAATTTGCACTGGA 121443 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| || ||| ||| || | |||||||| ||||| |||||| ||| Sbjct 121442 CCTCTGGCACGAGCATGGATCTTGTCGTCGACCATATGGCGTAGACGTTGGTAGTATGTT 121383 Query 251647 GGACCGATGAA 251657 ||||| | ||| Sbjct 121382 GGACCCAGGAA 121372 >seq68 Length=273079 Score = 87.8 bits (96), Expect = 5e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| ||| ||| || || || ||| | ||||| || | ||| | | | Sbjct 106579 ATCAGCCCACAGATATCACATACGTGAACTCTGAAGGCATCCGAAACTTCAAACAATCTC 106520 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || ||||| ||||| ||||| ||||||||||||||||| |||||| Sbjct 106519 TCCTTCAAGAAAGCAGCGGCACCATGTGAGATCATGCAATCACGCTCCATTTCTCCGAAA 106460 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || |||||||| || | || | ||| || | || || | || ||| | || ||| Sbjct 106459 CGTAGACCACCGTCTCTTGCACGACCTTCAACTGGTTGTCTTGTCAGAATTTGCACTGGA 106400 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| || ||| ||| || | |||||||| ||||| |||||| | | Sbjct 106399 CCTCTGGCACGAGCATGGATCTTGTCGTCGACCATATGGCGTAGACGTTGGTAGTACGTT 106340 Query 251647 GGACCGATGAA 251657 ||||| | ||| Sbjct 106339 GGACCCAGGAA 106329 >seq64 Length=284877 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 || ||| |||| || ||||||||||| | ||| ||||| |||||||| |||| || | | Sbjct 113375 GCCAGACCACCCAGAGAGTCACGGTCCAAGAAGTTAGTGGGTTCGTCGAGGACGAGCAAG 113316 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGA 354131 || || | ||||||| || | || || || ||||| ||||| ||||| ||||| Sbjct 113315 TGGGGGTTGTTCCACATAGCGCCCGCGAGCACGACCTTGACCTTTTGTCCCCCTGA 113260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471798478329718