Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq24 132 6e-25
seq49 127 2e-23
seq15 125 9e-23
seq75 114 2e-19
seq153 109 7e-18
seq155 105 8e-17
seq910 86.0 8e-11
>seq24
Length=518978
Score = 132 bits (146), Expect = 6e-25
Identities = 106/128 (83%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232
||| ||| | | ||| |||||||||||||||||||||| || || || |||| |||||
Sbjct 154711 TGACTTGCTACAGGCCTCCAACTACCTCGACATCAAGCCCCTCCTTGACGTTGGCTGCAA 154770
Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
| | || || |||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 154771 GACCGTTGCGAACATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACGTTCAACAT 154830
Query 1592293 CAAGTACG 1592300
| | |||
Sbjct 154831 TACGAACG 154838
>seq49
Length=368986
Score = 127 bits (140), Expect = 2e-23
Identities = 105/128 (82%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232
||| ||| | | ||| |||||||||||||||||||||| || || || |||| |||||
Sbjct 87494 TGACTTGCTACAGGCCTCCAACTACCTCGACATCAAGCCCCTCCTTGACGTTGGCTGCAA 87553
Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
| | || || |||||||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 87554 GACCGTTGCGAACATGATCAAGGGCAAGTCCCCCGAGGAGATCCGGAAGACGTTCAACAT 87613
Query 1592293 CAAGTACG 1592300
| | |||
Sbjct 87614 TACGAACG 87621
>seq15
Length=607589
Score = 125 bits (138), Expect = 9e-23
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | || |||||
Sbjct 330689 GCCTTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATG 330748
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| ||| |||||| | |
Sbjct 330749 TTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCGTTTCCGAGGGCAAGG 330808
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| || ||||| ||||| |||||||| || |||||| |||||||| ||||
Sbjct 330809 AGCAGACGATCGGCAACAAATTCGATGTATTGCTTCATGAGAGTTGCGTTCATACCGAGA 330868
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924
|| || || || | |||| | | || |||| |||||| ||||||||||||
Sbjct 330869 AGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTCGACGGCCTCG 330922
>seq75
Length=245354
Score = 114 bits (126), Expect = 2e-19
Identities = 168/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | || |||||
Sbjct 39529 GCCTTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATG 39470
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| || |||||| | || |
Sbjct 39469 TTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCATTTCCGAGGG-CGAG 39411
Query 868811 A-GCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869
| |||| || ||||| |||||||||||||| || ||| || |||||||| ||||
Sbjct 39410 AAGCAGACGATCGGCAACAAACTCGATGTATTGCTTCATTAGAGTTGCGTTCATACCGAG 39351
Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924
|| || || || | |||| | | || |||| |||||| | ||||||||||
Sbjct 39350 AAGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTGGACGGCCTCG 39296
>seq153
Length=80566
Score = 109 bits (120), Expect = 7e-18
Identities = 179/258 (69%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| |||||||| | || |||| ||| ||||| |||||||||||||| | ||| |||||
Sbjct 60786 CTGATCGACGTATCTTGCGGTGTTGTTGAAGACTCGGAGCATGGGCACAATGCCATTGGA 60845
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| || || || || || | |||||| |||| || || | |||| | | ||
Sbjct 60846 GTTTCCATTTGTACCGGCGATGTAGGCCCCGGTAGCCCGAATTCTGTGGATGTTGAGACC 60905
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||| || || ||| ||||| | || || || |||||||||||||| || ||
Sbjct 60906 GATGCCTCCAGCATTCTTTGAGATCATTGCACAGGTCTTTAGCGTGTCGTAGATACCGTC 60965
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||||||||| | || ||||| || || ||| | || | || ||
Sbjct 60966 AATACTGTCCTCCTTCATGTCGATCAGGAAGCATGATGAAAGTTGGGCCTGTGGGGTACC 61025
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||| |||||| |||||
Sbjct 61026 GGCCGAGAAGAGAGTGGG 61043
Score = 87.8 bits (96), Expect = 2e-11
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| || || || || || |||||| | || || ||| | || | || |||
Sbjct 68709 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 68650
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
||||||||||| ||||| ||||| ||| || || |||||||| ||||| || |||
Sbjct 68649 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 68590
Query 19167 AAGGGATTCGAGATTGGC 19184
||||| || ||| |||||
Sbjct 68589 AAGGGCTTTGAGGTTGGC 68572
>seq155
Length=79386
Score = 105 bits (116), Expect = 8e-17
Identities = 178/258 (69%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| ||||| || | || |||| ||| ||||| |||||||||||||| | ||| |||||
Sbjct 56882 CTGATCGACATATCTTGCGGTGTTGTTGAAGACTCGGAGCATGGGCACAATGCCATTGGA 56941
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| || || || || || | |||||| |||| || || | |||| | | ||
Sbjct 56942 GTTCCCATTTGTACCGGCGATGTAGGCCCCGGTAGCCCGAATTCTGTGGATGTTGAGACC 57001
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||| || || ||| ||||| | || || || |||||||||||||| || ||
Sbjct 57002 GATGCCTCCAGCATTCTTTGAGATCATTGCACAGGTCTTTAGCGTGTCGTAGATACCGTC 57061
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||||||||| | || ||||| || || ||| | || | || ||
Sbjct 57062 AATACTGTCCTCCTTCATGTCGATCAGGAAGCATGATGAAAGTTGGGCCTGTGGGGTACC 57121
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||| |||||| |||||
Sbjct 57122 GGCCGAGAAGAGAGTGGG 57139
Score = 87.8 bits (96), Expect = 2e-11
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| || || || || || |||||| | || || ||| | || | || |||
Sbjct 62826 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 62767
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
||||||||||| ||||| ||||| ||| || || |||||||| ||||| || |||
Sbjct 62766 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 62707
Query 19167 AAGGGATTCGAGATTGGC 19184
||||| || ||| |||||
Sbjct 62706 AAGGGCTTTGAGGTTGGC 62689
Score = 86.0 bits (94), Expect = 8e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| || || || || || |||||| | || || ||| | || | || |||
Sbjct 66790 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 66731
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
||||||||||| ||||| ||||| ||| || || |||||||| ||||| || |||
Sbjct 66730 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 66671
Query 19167 AAGGGATTCGAGATTGG 19183
||||| || ||| ||||
Sbjct 66670 AAGGGCTTTGAGGTTGG 66654
>seq910
Length=1128
Score = 86.0 bits (94), Expect = 8e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| || || || || || |||||| | || || ||| | || | || |||
Sbjct 992 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 1051
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
||||||||||| ||||| ||||| ||| || || |||||||| ||||| || |||
Sbjct 1052 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 1111
Query 19167 AAGGGATTCGAGATTGG 19183
||||| || ||| ||||
Sbjct 1112 AAGGGCTTTGAGGTTGG 1128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107055986411438
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |