Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq24 132 6e-25 seq49 127 2e-23 seq15 125 9e-23 seq75 114 2e-19 seq153 109 7e-18 seq155 105 8e-17 seq910 86.0 8e-11 >seq24 Length=518978 Score = 132 bits (146), Expect = 6e-25 Identities = 106/128 (83%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232 ||| ||| | | ||| |||||||||||||||||||||| || || || |||| ||||| Sbjct 154711 TGACTTGCTACAGGCCTCCAACTACCTCGACATCAAGCCCCTCCTTGACGTTGGCTGCAA 154770 Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 | | || || |||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 154771 GACCGTTGCGAACATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACGTTCAACAT 154830 Query 1592293 CAAGTACG 1592300 | | ||| Sbjct 154831 TACGAACG 154838 >seq49 Length=368986 Score = 127 bits (140), Expect = 2e-23 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232 ||| ||| | | ||| |||||||||||||||||||||| || || || |||| ||||| Sbjct 87494 TGACTTGCTACAGGCCTCCAACTACCTCGACATCAAGCCCCTCCTTGACGTTGGCTGCAA 87553 Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 | | || || |||||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct 87554 GACCGTTGCGAACATGATCAAGGGCAAGTCCCCCGAGGAGATCCGGAAGACGTTCAACAT 87613 Query 1592293 CAAGTACG 1592300 | | ||| Sbjct 87614 TACGAACG 87621 >seq15 Length=607589 Score = 125 bits (138), Expect = 9e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | || ||||| Sbjct 330689 GCCTTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATG 330748 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| |||||| | | Sbjct 330749 TTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCGTTTCCGAGGGCAAGG 330808 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || ||||| ||||| |||||||| || |||||| |||||||| |||| Sbjct 330809 AGCAGACGATCGGCAACAAATTCGATGTATTGCTTCATGAGAGTTGCGTTCATACCGAGA 330868 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || || || | |||| | | || |||| |||||| |||||||||||| Sbjct 330869 AGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTCGACGGCCTCG 330922 >seq75 Length=245354 Score = 114 bits (126), Expect = 2e-19 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | || ||||| Sbjct 39529 GCCTTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATG 39470 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| || |||||| | || | Sbjct 39469 TTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGACCTTCTCATTTCCGAGGG-CGAG 39411 Query 868811 A-GCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | |||| || ||||| |||||||||||||| || ||| || |||||||| |||| Sbjct 39410 AAGCAGACGATCGGCAACAAACTCGATGTATTGCTTCATTAGAGTTGCGTTCATACCGAG 39351 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || || || | |||| | | || |||| |||||| | |||||||||| Sbjct 39350 AAGAGCACAAGGAAGGGCCTCGGTTAAGAATTCTTGCTCGATTTGGACGGCCTCG 39296 >seq153 Length=80566 Score = 109 bits (120), Expect = 7e-18 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| | || |||| ||| ||||| |||||||||||||| | ||| ||||| Sbjct 60786 CTGATCGACGTATCTTGCGGTGTTGTTGAAGACTCGGAGCATGGGCACAATGCCATTGGA 60845 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | || || || || || | |||||| |||| || || | |||| | | || Sbjct 60846 GTTTCCATTTGTACCGGCGATGTAGGCCCCGGTAGCCCGAATTCTGTGGATGTTGAGACC 60905 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| || || ||| ||||| | || || || |||||||||||||| || || Sbjct 60906 GATGCCTCCAGCATTCTTTGAGATCATTGCACAGGTCTTTAGCGTGTCGTAGATACCGTC 60965 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| | || ||||| || || ||| | || | || || Sbjct 60966 AATACTGTCCTCCTTCATGTCGATCAGGAAGCATGATGAAAGTTGGGCCTGTGGGGTACC 61025 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||| |||||| ||||| Sbjct 61026 GGCCGAGAAGAGAGTGGG 61043 Score = 87.8 bits (96), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || || || || || |||||| | || || ||| | || | || ||| Sbjct 68709 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 68650 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 ||||||||||| ||||| ||||| ||| || || |||||||| ||||| || ||| Sbjct 68649 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 68590 Query 19167 AAGGGATTCGAGATTGGC 19184 ||||| || ||| ||||| Sbjct 68589 AAGGGCTTTGAGGTTGGC 68572 >seq155 Length=79386 Score = 105 bits (116), Expect = 8e-17 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| || | || |||| ||| ||||| |||||||||||||| | ||| ||||| Sbjct 56882 CTGATCGACATATCTTGCGGTGTTGTTGAAGACTCGGAGCATGGGCACAATGCCATTGGA 56941 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | || || || || || | |||||| |||| || || | |||| | | || Sbjct 56942 GTTCCCATTTGTACCGGCGATGTAGGCCCCGGTAGCCCGAATTCTGTGGATGTTGAGACC 57001 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| || || ||| ||||| | || || || |||||||||||||| || || Sbjct 57002 GATGCCTCCAGCATTCTTTGAGATCATTGCACAGGTCTTTAGCGTGTCGTAGATACCGTC 57061 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| | || ||||| || || ||| | || | || || Sbjct 57062 AATACTGTCCTCCTTCATGTCGATCAGGAAGCATGATGAAAGTTGGGCCTGTGGGGTACC 57121 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||| |||||| ||||| Sbjct 57122 GGCCGAGAAGAGAGTGGG 57139 Score = 87.8 bits (96), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || || || || || |||||| | || || ||| | || | || ||| Sbjct 62826 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 62767 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 ||||||||||| ||||| ||||| ||| || || |||||||| ||||| || ||| Sbjct 62766 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 62707 Query 19167 AAGGGATTCGAGATTGGC 19184 ||||| || ||| ||||| Sbjct 62706 AAGGGCTTTGAGGTTGGC 62689 Score = 86.0 bits (94), Expect = 8e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || || || || || |||||| | || || ||| | || | || ||| Sbjct 66790 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 66731 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 ||||||||||| ||||| ||||| ||| || || |||||||| ||||| || ||| Sbjct 66730 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 66671 Query 19167 AAGGGATTCGAGATTGG 19183 ||||| || ||| |||| Sbjct 66670 AAGGGCTTTGAGGTTGG 66654 >seq910 Length=1128 Score = 86.0 bits (94), Expect = 8e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || || || || || |||||| | || || ||| | || | || ||| Sbjct 992 GACAGCATTGGGGGTACTGTCACTTGCGTGATCAGGAATGTTCCGACTGGTTTGGGAGAG 1051 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 ||||||||||| ||||| ||||| ||| || || |||||||| ||||| || ||| Sbjct 1052 CCGTGCTTTGATAAGATAGAGGCAATGCTTGCACATGCCATGCTCAGTATCCCTGCTACC 1111 Query 19167 AAGGGATTCGAGATTGG 19183 ||||| || ||| |||| Sbjct 1112 AAGGGCTTTGAGGTTGG 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107055986411438