Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq81 107 1e-17 seq17 105 5e-17 seq55 100 2e-15 seq7 100 2e-15 seq5 95.1 9e-14 seq12 89.7 4e-12 >seq81 Length=223429 Score = 107 bits (118), Expect = 1e-17 Identities = 139/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 282342 |||||||||||||| ||| | | | || | | || |||| |||| || || || Sbjct 207988 GGTTCCACCACCCAAATCGTACACAG---CAATGA---CTCTGTCCTGGTCCTTGTCGAG 208041 Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 |||||| || | ||| ||||||||||| || || | || | | ||| || |||||||| Sbjct 208042 ACCATAGGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACACGGAGAACGTTCAGACCAGC 208101 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 |||| || ||||| || || ||||||| ||| || ||||| || || ||||| ||||| Sbjct 208102 AATTTGACCAGCATCCTTGGTTGCTTGTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGT 208161 Query 282463 AATAACGGCAT 282473 | ||||||| Sbjct 208162 GACGACGGCAT 208172 >seq17 Length=569005 Score = 105 bits (116), Expect = 5e-17 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 282342 |||||||||||||| ||| | | | || | | || |||| |||| || ||||| Sbjct 222461 GGTTCCACCACCCAAATCGTACACAG---CAATGA---CTCTGTCCTGGTCCTTGTCAAG 222514 Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 |||||| || | ||| ||||||||||| || || | || | | ||| || |||||||| Sbjct 222515 ACCATAGGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACACGGAGAACGTTCAGACCAGC 222574 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 |||| || ||||| || || ||||||| ||| || ||||| || || ||||| ||||| Sbjct 222575 AATTTGACCGGCATCCTTGGTTGCTTGTCGTTGAGAGTCGTTGAAGTAGGCAGGGACAGT 222634 >seq55 Length=331452 Score = 100 bits (110), Expect = 2e-15 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || || || || ||||||||||| | ||| | || | |||| | ||| Sbjct 245347 ACGAGACGGTTGTCGAAGTCCTCACCTCCCAAGTGAGTGTCACCAGCAGTAGACTTGACT 245406 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || |||| | ||| || | ||||| |||||||||||| | ||| Sbjct 245407 TCGAAGATACCCTCCTCAATGGTCAAGAGGGAGACATCGAAGGTTCCACCACCAAGATCG 245466 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || || || ||||| || |||| |||||| Sbjct 245467 AAGATGAGAACGTTACGCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCG 245526 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || || |||| | || || ||||| ||||| || || || || Sbjct 245527 GCGGTGGGCTCGTTGATGATTCGGAGGACGTTGAGACCGGCAATCAGACCGGCGTCCTTG 245586 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || ||||| | || || ||| | || ||||| || ||||| | |||||| Sbjct 245587 GTAGCTTGACGCTGGGAGTCGGTGAAGTATGCGGGGACAGTGACAACGGC 245636 Score = 89.7 bits (98), Expect = 4e-12 Identities = 244/369 (66%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || ||||| ||||| ||||| || || | | |||||| Sbjct 244507 ATACCGTTGGCATCAACATCGAAGGTGACCTCAATCTGAGGAACACCACGGGGCGCAGGT 244566 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | ||||| || || || || ||| || || ||| Sbjct 244567 GGGATACCAGTGAGCTCGAACTTGCCCAGCAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 244626 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA-CTCT 281619 |||||||| | ||| || || | | || || || || | || | || | |||| Sbjct 244627 CCCTCGAAGACTTGAATGAGCACACCGGGCTGGTTGTCAGAGAAGGTGGAGAAGACCTCT 244686 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || || ||| || || ||||||| || | |||||||| |||||||| Sbjct 244687 -GACTTCTTGGTAGGGATGGTGGTGTTTCGGGGGATGAGCTTGGTCATCTGGCCACCAGC 244745 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 || || | ||| ||||| || || | ||||| | |||| || | || | || || Sbjct 244746 AGTCTCGATACCGAGAGACAGTGGCGCAACATCGAGAAGGAGGATCTCGTTGGTAGACTT 244805 Query 281738 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | | || | |||| ||||| || || || | |||||||| || |||||||| || Sbjct 244806 GGAGGAGGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCGTAGGCAACAGCCTC 244865 Query 281797 ATCAGGATT 281805 |||||| || Sbjct 244866 ATCAGGGTT 244874 >seq7 Length=756160 Score = 100 bits (110), Expect = 2e-15 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 |||||||| || || || |||||||||||||| | || | || | |||| | ||| Sbjct 510245 ACAAGACGGTTGTCGAAGTCTTCACCTCCCAAGTGGGTGTCACCAGCAGTAGACTTGACT 510186 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || |||| | || || | ||||| |||||||||||| | ||| Sbjct 510185 TCGAAGATACCCTCCTCAATGGTCAGGAGGGAGACATCGAAGGTTCCACCACCAAGATCG 510126 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || || || ||||| || |||| |||||| Sbjct 510125 AAGATGAGAACGTTACGCTCACCCTCGACCTTCTTGTCGAGACCGTATGCAATAGCAGCG 510066 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || || |||| | ||| || ||||| ||||| || || || || Sbjct 510065 GCGGTGGGCTCGTTGATGATTCGGAGAACGTTGAGACCGGCAATCAGACCGGCGTCCTTG 510006 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || ||||| | || || ||| | || ||||| || || || | |||||| Sbjct 510005 GTAGCTTGACGCTGGGAGTCGGTGAAGTATGCGGGGACGGTGACAACGGC 509956 >seq5 Length=878710 Score = 95.1 bits (104), Expect = 9e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| |||||||| | |||||||||||||| ||| | || | |||||| |||| || Sbjct 157116 GAATTCTTCTTCCACGCGATGGCTGGTCGTGAGGGTCTCATCGACACAGCTGTTAAGACC 157175 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 || || ||||| || || || || ||||||||| |||||||||| | | | Sbjct 157176 GCCGAGACTGGATACATCCAGCGACGTCTTGTCAAGGCGCTTGAAGATGTCATGGCTAAG 157235 Query 435253 TATGATGGTACAGTGAGAAA 435272 |||||||| ||||||||||| Sbjct 157236 TATGATGGCACAGTGAGAAA 157255 >seq12 Length=680961 Score = 89.7 bits (98), Expect = 4e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| |||||||| | |||||||||||||| ||| | || | |||||| |||| || Sbjct 165980 GAATTCTTCTTCCACGCGATGGCTGGTCGTGAGGGTCTCATCGACACAGCTGTTAAGACC 166039 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 || || ||||| || || || || ||||||||| |||||||||| | | | Sbjct 166040 GCCGAGACTGGATACATCCAGCGACGTCTTGTCAAGGCGCTTGAAGATGTCATGGCTAAG 166099 Query 435253 TATGATGGTACAGTGAGAAATGCAAATGGTAAACTTATATCATGTGTTTATGGTGATAAT 435312 |||||||| || ||||| ||| | ||| | | | || |||||||||||| || Sbjct 166100 TATGATGGCACGGTGAGGAATTCTCTGGGTGACATCGTCCAATTTGTTTATGGTGAGGAT 166159 Query 435313 GG 435314 || Sbjct 166160 GG 166161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740580616885164