Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq96 165 2e-35 seq7 165 2e-35 >seq96 Length=182788 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||||||||||||||||||| || || || || || || | Sbjct 166665 TACCACCACGAAGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 166606 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| ||| || || || || || |||||||| || || | ||||||||| || | Sbjct 166605 ACAAGGTTCGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGGGG 166546 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||||||||||| ||| || || || |||||||| | || | Sbjct 166545 GAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTCCA 166486 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || |||||||| || | ||||| || || || ||||| Sbjct 166485 CTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 166437 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||||||||| || || || || || ||||| | | | ||| Sbjct 166880 ACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACC 166821 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || || ||||||||||| | || || || || || || || |||||||| Sbjct 166820 ATCCTCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTT 166761 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||| | || ||||| ||||| || || | || ||||| || || || Sbjct 166760 ATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAACTTCTAATGTGAT 166701 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || |||||||| Sbjct 166700 TGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665 >seq7 Length=756160 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||||||||| |||||||| || || || || || || | Sbjct 415658 TACCACCACGAAGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGG 415599 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| ||| || || ||||| || ||||| || || || | ||||||||| || | Sbjct 415598 ACAAGGTTCGACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGG 415539 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||||||||||| ||| || || || |||||||| | ||| | Sbjct 415538 GAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCCA 415479 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || |||||||| || | ||||| || || || ||||| Sbjct 415478 CTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 415430 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||| || ||||||||||| || || || || || ||||| Sbjct 415884 CCTCCACGAAGACGCAAGACCAAGTGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTC 415825 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || |||||||| || ||||| ||||| | || ||| || || || || Sbjct 415824 AAGGTGCGACCATCCTCTAGTTGCTTACCAGCGAAGATCAATCGTTGCTGGTCCGGTGGG 415765 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| | || ||||| ||||| || || | || ||| Sbjct 415764 ATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAACT 415705 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || ||||| || ||||| ||||| || || |||||||| Sbjct 415704 TCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 415658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981814444223746