Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq102 123 2e-23 seq38 123 2e-23 seq96 102 8e-17 seq7 100 3e-16 seq59 86.0 6e-12 seq10 86.0 6e-12 >seq102 Length=175646 Score = 123 bits (136), Expect = 2e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | ||| ||| ||| ||||| |||||||| Sbjct 56168 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACC-GTCTTCGAGTTGCTTGCC 56226 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||||||||| ||||| ||||||||||| |||||| || Sbjct 56227 GGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTT 56286 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | |||||| || | ||||| || ||||| || || || Sbjct 56287 GACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 56346 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 56347 CTTGACGAAGATCTGCATGACT 56368 >seq38 Length=423541 Score = 123 bits (136), Expect = 2e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | ||| ||| ||| ||||| |||||||| Sbjct 319980 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGACC-GTCTTCGAGTTGCTTGCC 320038 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||||||||| ||||| ||||||||||| |||||| || Sbjct 320039 GGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGATTT 320098 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | |||||| || | ||||| || ||||| || || || Sbjct 320099 GACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 320158 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 320159 CTTGACGAAGATCTGCATGACT 320180 >seq96 Length=182788 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || ||||| ||| || || ||| | ||||||||||||||||| Sbjct 166633 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCA-TCCTCGAGCTGCTTGCC 166575 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| || || || || || || ||||||||||| || |||||| || Sbjct 166574 AGCAAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTGAATCTTTGATTT 166515 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||| || | || |||||| || | |||| || |||||||| ||||| Sbjct 166514 GACGTTGTCGATCGTATCCGAGGACTCCACTTCCAATGTGATTGTCTTGCCGGTGAGAGT 166455 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 166454 CTTGACGAAGATTTGCAT 166437 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| || || || |||||||||| || ||| ||| | ||||| | |||||| || || Sbjct 166856 CTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCA-TCCTCCAACTGCTTACCAGCAA 166798 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || | ||||||||||| || |||||||||||||| || |||||| ||| | | Sbjct 166797 AGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACAT 166738 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 |||| ||||| | | ||| || || | |||| || || || |||| ||| || | Sbjct 166737 TGTCAATTGTGTCTGATGACTCAACTTCTAATGTGATTGTCTTTCCAGTCAAAGTCTTGA 166678 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 166677 CGAAGATCTGCAT 166665 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| ||| |||||| || |||||||| Sbjct 166121 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACC-GTCCTCAAGTTGCTTGCC 166063 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || || || |||||||| || || ||||| |||||||| |||||| ||| Sbjct 166062 CGCGAAGATCAGACGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTT 166003 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||| | || || || || | |||| ||| |||||||| Sbjct 166002 GACATTGTCGATGGTGTCAGAGGATTCAACCTCAAGAGTGATGGTCTTGCCGGT 165949 >seq7 Length=756160 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | ||| ||| |||||| || |||||||| Sbjct 415114 GTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACC-GTCCTCAAGTTGCTTGCC 415056 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || || || |||||||||||||| ||||| |||||||| |||||| ||| Sbjct 415055 CGCGAAGATCAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTT 414996 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||||| || || || || | |||| ||| |||||||| Sbjct 414995 GACATTGTCGATGGTGTCGGAGGATTCAACCTCAAGAGTGATGGTCTTGCCGGT 414942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || || || || ||||| ||| || || ||| | |||||||| Sbjct 415635 AAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGACCA-TCCTCGAG 415577 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| ||||||| || || || || || || ||||||||||| || || Sbjct 415576 TTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGGGGGAATGCCTTCCTTATCTTGAAT 415517 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| |||| | || | ||| || | || ||||| || | || | || ||||| Sbjct 415516 CTTTGATTTGACGTTGTCGATCGTATCCGAGGATTCCACTTCCAATGTAATTGTCTTGCC 415457 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| || ||||| Sbjct 415456 GGTGAGAGTCTTGACGAAGATTTGCAT 415430 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| || || || |||||||||| || ||| ||| | ||||| || ||||| || ||| Sbjct 415849 CTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCA-TCCTCTAGTTGCTTACCAGCGA 415791 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || | || |||||||| || |||||||||||||| || |||||| ||| | | Sbjct 415790 AGATCAATCGTTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTGGACTTCACAT 415731 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 |||| ||||| | | ||| || || | |||| || || || |||| || || | Sbjct 415730 TGTCAATTGTGTCTGATGACTCAACTTCTAATGTGATTGTCTTTCCAGTCAAGGTCTTGA 415671 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 415670 CGAAGATCTGCAT 415658 >seq59 Length=321881 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| || ||||| || ||| | || || ||||||||||| || || || || ||||| Sbjct 265802 GTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTT 265861 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| |||| | || | ||||||| || ||| || || | ||||| Sbjct 265862 GTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCGGAGGACTCGACCTCAAGGGTGAT 265921 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAA 133651 ||| ||||| || || || || ||||| Sbjct 265922 GGTCTTGCCCGTAAGGGTCTTGACGAA 265948 >seq10 Length=717553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| || ||||| || ||| | || || ||||||||||| || || || || ||||| Sbjct 20082 GTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTT 20023 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| |||| | || | ||||||| || ||| || || | ||||| Sbjct 20022 GTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCGGAGGACTCGACCTCAAGGGTGAT 19963 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAA 133651 ||| ||||| || || || || ||||| Sbjct 19962 GGTCTTGCCCGTAAGGGTCTTGACGAA 19936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414672641360