Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq153 127 5e-24 seq155 105 2e-17 >seq153 Length=80566 Score = 127 bits (140), Expect = 5e-24 Identities = 256/373 (69%), Gaps = 9/373 (2%) Strand=Plus/Minus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TA 110742 |||| || ||| | ||||||||||| |||| |||| ||| || |||| ||||| | Sbjct 60835 TTGTGCCCATGCTCCGAGTCTTCAACAACACCGCAAGATACGTCGATCAGGGTGGAAACA 60776 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || | ||||| ||||| ||||| || |||||| | ||| | ||||| ||| Sbjct 60775 AGCGTCCGGGAGCGTTTGCCATCTACCTCGAGCCATGGCATGCGGATGTCTTTGAGTTCC 60716 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | || || || || || || ||| || ||| | ||||| ||| | || || || Sbjct 60715 TTGACCTCCGAAAGAACCATGGAAAAGAGGAAGTTCGTGCACGCGATCTCTTCTACGCCC 60656 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 |||||||| | ||| | |||||||| |||||| | | || || ||| |||| |||| Sbjct 60655 TGTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACGGAGACTGGACTCTGATGT 60596 Query 110923 GTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTAC 110981 | || || || | || || || | || || || || | ||||| || | || ||| Sbjct 60595 G-CCCCAACGAATGCCCCGGCCTGGCAGACGTTTACGGGGATGAGTTCGAGGCTCTCTAC 60537 Query 110982 GAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACAAATTCCA-GCTCAAGAACTTTGGT 111039 || ||||| || | |||||| ||| |||||| || | || | ||||| |||| |||| Sbjct 60536 GAGAAATACGAGAGAGAAGGTAAGGGTCGCAAGACTA--TCAAGGCTCAGAAACTCTGGT 60479 Query 111040 TCAAAATCCTTGA 111052 | ||||| || Sbjct 60478 ACTCCATCCTCGA 60466 >seq155 Length=79386 Score = 105 bits (116), Expect = 2e-17 Identities = 170/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TA 110742 |||| || ||| | ||||||||||| |||| |||| |||||| |||| ||||| | Sbjct 56931 TTGTGCCCATGCTCCGAGTCTTCAACAACACCGCAAGATATGTCGATCAGGGTGGAAACA 56872 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || | ||||| || || ||||| || |||||| | ||| | ||||| ||| Sbjct 56871 AGCGTCCGGGAGCGTTTGCCATTTACCTCGAGCCATGGCATGCGGATGTCTTTGAGTTCC 56812 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | || || || || || || ||| || ||| | ||||| ||| | || || || Sbjct 56811 TTGACCTCCGAAAGAACCATGGAAAAGAGGAAGTTCGTGCACGCGATCTTTTCTACGCCC 56752 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 |||||||| | ||| | |||||||| |||||| | | || || ||| |||| |||| Sbjct 56751 TGTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACGGAGACTGGACTCTGATGT 56692 Query 110923 GTCC 110926 | || Sbjct 56691 GCCC 56688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186797381076454