Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq96 104 6e-17 seq102 102 2e-16 seq38 102 2e-16 seq7 98.7 2e-15 seq153 96.9 8e-15 >seq96 Length=182788 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| || || || |||||| | || || ||| |||||||| |||| || ||| Sbjct 165947 TCACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCTGACACCATCGACAATGTCAAGT 166006 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 ||||| ||||| || || || ||| |||||| ||| | || |||||||| || | Sbjct 166007 CCAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAGCAACGTCTGATCTTCGCGGGCA 166066 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 |||| | || || || | ||| | |||| |||||| ||||||| ||||||||||| | Sbjct 166067 AGCAACTTGAGGACGGTCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTCC 166126 Query 206372 ACCTTGT 206378 ||||||| Sbjct 166127 ACCTTGT 166133 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| ||||||||||| || || || |||| Sbjct 166451 CAAGACTCTCACCGGCAAGACAATCACATTGGAAGTGGAGTCCTCGGATACGATCGACAA 166510 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || || |||||||||||| || ||||| ||| ||||| ||| | || || || Sbjct 166511 CGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAACAACGTCTCATTTT 166570 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| | || ||||| | || ||| |||| |||||| |||| || || || Sbjct 166571 TGCTGGCAAGCAGCTCGAGGATGGTCGAACCTTGTCCGACTACAACATCCAAAAGGAATC 166630 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||| | ||| | | ||||| Sbjct 166631 TACTCTGCACTTAGTTCTCCGTCTTCG 166657 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| || ||||| || || ||| Sbjct 166668 CAGATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCAGAC 166727 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| || || || ||||| || |||||| || Sbjct 166728 ACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAGCAG 166787 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || ||||||||||| ||||| | || ||| |||||||||| || Sbjct 166788 CGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGCGATTACAACATC 166847 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| ||||| ||| | || ||| | ||||| Sbjct 166848 CAAAAGGAGAGCACTCTGCACTTGGTCTTGCGTCTTCG 166885 >seq102 Length=175646 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| ||||||| Sbjct 56361 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 56302 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||| ||||| || ||||| || || ||| ||| Sbjct 56301 ACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAGCAA 56242 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||| | ||||| || | || | ||||||||||| || Sbjct 56241 CGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAACATC 56182 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||||||||| || Sbjct 56181 CAGAAGGAGTCGACTCTTCACCTCGT 56156 >seq38 Length=423541 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| ||||||| Sbjct 320173 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 320114 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||| ||||| || ||||| || || ||| ||| Sbjct 320113 ACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAGCAA 320054 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||| | ||||| || | || | ||||||||||| || Sbjct 320053 CGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAACATC 319994 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||||||||| || Sbjct 319993 CAGAAGGAGTCGACTCTTCACCTCGT 319968 >seq7 Length=756160 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || || || |||||||||||| || || || |||| Sbjct 415444 CAAGACTCTCACCGGCAAGACAATTACATTGGAAGTGGAATCCTCGGATACGATCGACAA 415503 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || || |||||||||||| || ||||| ||| ||||| ||| | || || || Sbjct 415504 CGTCAAATCAAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAACAACGTCTCATTTT 415563 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| | || ||||| | || ||| |||| |||||| |||| || || || Sbjct 415564 CGCTGGCAAGCAACTCGAGGATGGTCGAACCTTGTCCGACTACAACATCCAAAAGGAATC 415623 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||| | ||| | | ||||| Sbjct 415624 TACCCTGCACTTAGTTCTCCGTCTTCG 415650 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| || || || |||||| | || || ||| || ||||| |||| || ||| Sbjct 414940 TCACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCCGACACCATCGACAATGTCAAGT 414999 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 ||||| ||||| || || || ||| || ||| ||| | || |||||||| || | Sbjct 415000 CCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAACGTCTGATCTTCGCGGGCA 415059 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 |||| | || || || | ||| | | || |||||| ||||||| ||||||||||| | Sbjct 415060 AGCAACTTGAGGACGGTCGCACTCTCTCTGACTACAACATCCAGAAGGAGTCTACTCTCC 415119 Query 206372 ACCTTGT 206378 ||||||| Sbjct 415120 ACCTTGT 415126 >seq153 Length=80566 Score = 96.9 bits (106), Expect = 8e-15 Identities = 173/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || |||||||||| |||||||| | || ||| | ||| ||| | | ||| || | Sbjct 60421 GCATCCTTGTAGAGCATGAAGGGGTTCCCGGTCTCGGTTTGGGCCTCGAGGATGGAGTAC 60480 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCT-CG-CTCTT-CCTTCTTTTTCGTATCTCTCA 173223 || |||| || || || | |||| | || | ||| |||||| | |||||| |||| Sbjct 60481 CAGAGTTTCTGAGCCTTGA---TAGTCTTGCGACCCTTACCTTCTCTCTCGTATTTCTCG 60537 Query 173224 TAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAA 173283 ||||| | ||||| || | |||||||| || | || ||||| ||| || || || Sbjct 60538 TAGAGAGCCTCGAACTCATCCCCGTAAACGTCTGCCAGGCCGGGGCATTCGTTGGGGCAC 60597 Query 173284 AAGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATC 173343 | ||| |||| | ||| | |||| || | |||||||||||| |||| | |||| | Sbjct 60598 ATCAGAGTCCAGTCTCCGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCACAGG 60657 Query 173344 GCGTAGAA 173351 |||||||| Sbjct 60658 GCGTAGAA 60665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181805445931894