Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq75 129 8e-24 seq15 114 2e-19 seq153 104 3e-16 seq155 96.9 5e-14 >seq75 Length=245354 Score = 129 bits (142), Expect = 8e-24 Identities = 208/296 (70%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| ||||| ||||||||||| || | || | Sbjct 38633 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACCGCCGAAGAAATTGATC 38691 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | | ||| || | |||||||||||| | |||||| Sbjct 38692 TCTCCAAGGACCTTCACGATTGGAACAACAGACTCAACGACGACGAGCGTTACTTCATCT 38751 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || |||||||| || || ||| || ||||| || || ||||||||| | || Sbjct 38752 CACATGTCCTCGCATTCTT-CGCAGCATCTGATGGAATTGTCAACGAGAACCTTGTCGAG 38810 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || || ||| | || ||||| || | || ||||| ||||| ||| Sbjct 38811 CGCTTCAGTGGTGAAGTTCAAATTCCTGAGGCTCGATGCTTCTACGGTTTCCAAATCATG 38870 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || |||||||||||||| |||||||| ||||| ||||||||||| | ||||| Sbjct 38871 ATGGAGAACATCCACTCTGAGACCTACTCTCTCCTCATCGACACCTATATTAAGGA 38926 Score = 89.7 bits (98), Expect = 7e-12 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 |||||||||| | |||||| |||| || | | |||| | || || || || |||| Sbjct 39296 CGAGGCCGTCCAAATCGAGCAAGAATTCTTAACCGAGGCCCTTCCTTGTGCTCTTCTCGG 39355 Query 1456591 CATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 |||||||| || || ||| || ||||| || ||| || ||||| || ||||| Sbjct 39356 TATGAACGCAACT-CTAATGAAGCAATACATCGAGTTT-GTTGCCGATCGTCTGCTTCTC 39413 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGAT 1456710 || ||||| | ||||| |||| | | ||||||| ||| | |||||| || Sbjct 39414 GCCCTCGGAAATG-AGAAGGTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACAT 39472 Query 1456711 CTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGG 1456769 ||| || | |||||||||||||| |||||| || || || || ||| |||||||| Sbjct 39473 CTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAAAAGGCCGG 39532 Query 1456770 CGTCA 1456774 |||| Sbjct 39533 TGTCA 39537 >seq15 Length=607589 Score = 114 bits (126), Expect = 2e-19 Identities = 186/261 (71%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574 |||||| | | ||| |||||||||||| |||||| |||| || | | |||| | || | Sbjct 330937 CCAAGCTGTT-ATCACCGAGGCCGTCGAAATCGAGCAAGAATTCTTAACCGAGGCCCTTC 330879 Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634 | || || |||| |||||||| || |||||| || ||||| |||||| || || Sbjct 330878 CTTGTGCTCTTCTCGGTATGAACGCAACT-CTCATGAAGCAATACATCGAATTT-GTTGC 330821 Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694 ||| || |||||| || ||||| || ||||| |||| | | ||||||| ||| Sbjct 330820 CGATCGTCTGCTCCTTGCCCTCGGAAACG-AGAAGGTCTACAAGTCTACCAACCCATTCG 330762 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCG 1456753 | |||||| ||||| || | |||||||||||||| |||||| || || || | Sbjct 330761 ACTTCATGGAGAACATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTG 330702 Query 1456754 AGTACGCCAAGGCCGGCGTCA 1456774 | ||| |||||||| |||| Sbjct 330701 ACTACCAAAAGGCCGGTGTCA 330681 Score = 114 bits (126), Expect = 2e-19 Identities = 205/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| ||||| ||||||||||| || | || | Sbjct 331593 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACCGCCGAAGAAATTGATC 331535 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | | ||| || | ||| ||||| || | |||||| Sbjct 331534 TCTCCAAGGACCTTCACGATTGGAACAACAGACTCACCGATGACGAACGTTACTTCATCT 331475 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || |||||||| || || ||| || ||||| || || ||||||||| | || Sbjct 331474 CACATGTCCTCGCATTCTT-CGCAGCATCTGATGGAATTGTCAACGAGAACCTTGTCGAG 331416 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || || ||| | || ||||| || | || ||||| ||||| ||| Sbjct 331415 CGCTTCAGTGGTGAAGTTCAAATTCCTGAGGCTCGATGCTTCTACGGTTTCCAAATCATG 331356 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || |||||||| ||||| ||||||||||| | ||||| Sbjct 331355 ATGGAGAACATCCACTCCGAGACCTACTCTCTCCTCATCGACACCTATATTAAGGA 331300 >seq153 Length=80566 Score = 104 bits (114), Expect = 3e-16 Identities = 200/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAG-TTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 ||||| ||||| || ||||| ||| || | ||||| ||||| ||||| || || | Sbjct 61073 ATGTC-CAGCAAATTCTTCAC-TCACGCATCTCCCACTCTCTTCTCGGCCGGTACCCCAC 61016 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 | || ||| || ||||| ||| | |||||||||| || || || || |||| Sbjct 61015 AGGCCCAACTTTCATCATGCTTCCTGATCGACATGAAGGAGGACAGTATTGACGGTATCT 60956 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | |||||||| ||| || || | ||||| ||| || || ||||||||| | | Sbjct 60955 ACGACACGCTAAAGACCTGTGCAATGATCTCAAAGAATGCTGGAGGCATCGGTCTCAACA 60896 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 |||| | || || | || |||||| | || || || || || | ||||| ||| Sbjct 60895 TCCACAGAATTCGGGCTACCGGGGCCTACATCGCCGGTACAAATGGAAACTCCAATGGCA 60836 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||||||||||| || || || ||| |||| || | |||||||| ||| Sbjct 60835 TTGTGCCCATGCTCCGAGTCTTCAACAACACCGCAAGATACGTCGATCAG 60786 Score = 86.0 bits (94), Expect = 9e-11 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 262095 TCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGG 262154 |||||| |||| ||| |||||| | ||||||||| | |||| |||| ||||||||| Sbjct 60484 TCTGGTACTCCATCCTCGAGGCCCAAACCGAGACCGGGAACCCCTTCATGCTCTACAAGG 60425 Query 262155 ACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC--CAACCT 262212 | || ||||| | ||||||||| |||||||||| || | | || || |||||| Sbjct 60424 ATGCTTGCAACCGAAAGAGCAACCAGAAGAACCTGGGAACAAT--CCGAAGCTCCAACCT 60367 Query 262213 GTGCACCGAGATCGT 262227 |||||| || || || Sbjct 60366 GTGCACAGAAATTGT 60352 >seq155 Length=79386 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||| ||||| ||||| || || | | || ||| || ||||| ||| | ||| Sbjct 57139 CCCACTCTCTTCTCGGCCGGTACCCCACAGGCCCAACTTTCATCATGCTTCCTGATCGAC 57080 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || || || || ||||| |||||||| ||| || || | ||||| Sbjct 57079 ATGAAGGAGGACAGTATTGACGGTATCTACGACACGCTAAAGACCTGTGCAATGATCTCA 57020 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| || || ||||||||| | | |||| | || || | || |||||| | Sbjct 57019 AAGAATGCTGGAGGCATCGGTCTCAACATCCACAGAATTCGGGCTACCGGGGCCTACATC 56960 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || || || || | ||||| ||| ||||||||||||| || || || ||| |||| Sbjct 56959 GCCGGTACAAATGGGAACTCCAATGGCATTGTGCCCATGCTCCGAGTCTTCAACAACACC 56900 Query 260165 GCGCGCTACGTCGACCAG 260182 || | || ||||| ||| Sbjct 56899 GCAAGATATGTCGATCAG 56882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177713397836268