Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq28 109 4e-19 seq6 93.3 3e-14 >seq28 Length=467070 Score = 109 bits (120), Expect = 4e-19 Identities = 268/405 (66%), Gaps = 11/405 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||| || | |||||||| || | | || |||||||| || || || ||||| ||| Sbjct 292813 CCGAAAGTTATCAATGGTCCGGAGGTTCTGAACAAATATGTTGGACAGTCAGAAGAGAAT 292872 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||| | || ||||| || ||| | || | ||| ||| | | ||| | Sbjct 292873 ATCCGAAAGCTCTTCGCTGATGCCGAAAAGGAGTATAAAGAGAAAGGAGACGAGAGTGGT 292932 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--------- 19599 | || || || || | ||||||||||| || | || |||||||||||| Sbjct 292933 CTTCATATCATCATTTTCGATGAATTGGATGCCGTTTGCAAGCAAAGAGGTAGTGGGGCC 292992 Query 19600 TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 ||||| || ||| || |||| ||| |||||||| || ||||| ||| | || ||| Sbjct 292993 GGTGGTGGAACTGGTGTTGGAGACAGTGTGGTCAATCAGCTGCTGTCCAAACTTGATGGT 293052 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 || |||| || || ||||| | | || || ||||||||| | |||| | || ||| Sbjct 293053 GTCGACCAGCTCAACAATATCCTTCTGATCGGAATGACTAATCGTATGGATATGATTGAC 293112 Query 19720 AGCGC-CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || || ||| |||||||||| ||||| | | || || ||| ||| || ||||| Sbjct 293113 GATGCGCTGCTTA-GACCCGGTCGATTGGAGGTCCACATGGAGATTTCCTTGCCAGATGA 293171 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCG 19823 || ||| | | | ||| | || || || || || | ||||| Sbjct 293172 ATCCGGAAGGGCACAGATTCTGAAAATCCACACCTCGAAGATGCG 293216 >seq6 Length=779283 Score = 93.3 bits (102), Expect = 3e-14 Identities = 255/392 (65%), Gaps = 9/392 (2%) Strand=Plus/Plus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 |||||||| || | | || |||||||| || || || ||||| ||| | ||| | Sbjct 561492 AATGGTCCGGAGGTTCTGAACAAATATGTTGGACAGTCAGAAGAGAATATCCGAAAGCTC 561551 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATA 19560 || ||||| || ||| | || | ||| ||| | | ||| | | || || || Sbjct 561552 TTCGCTGATGCCGAAAAGGAGTATAAAGAGAAAGGAGACGAGAGTGGTCTCCATATCATC 561611 Query 19561 ATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT---------TCTGGTGTAAAT 19611 || | ||||||||||| || | || |||||||||||| ||||| || | Sbjct 561612 ATTTTCGATGAATTGGATGCCGTTTGCAAGCAAAGAGGTAGTGGGGCCGGTGGTGGAACT 561671 Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 || || |||| ||| |||||||| || ||||| ||| | || ||||| |||| || Sbjct 561672 GGTGTTGGAGACAGTGTGGTCAATCAGCTGCTGTCCAAACTTGATGGTGTCGACCAGCTC 561731 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 || ||||| | | || || ||||| ||| | |||| | || ||| || | | Sbjct 561732 AACAATATCCTTCTGATCGGAATGACCAATCGTATGGATATGATTGACGATGCGCTGCTC 561791 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791 |||| ||||| ||||| | | || || ||| ||| || ||||||| ||| | | Sbjct 561792 AGACCGGGTCGATTGGAGGTCCACATGGAGATTTCCTTGCCAGATGAATCCGGAAGGGCA 561851 Query 19792 GAAATTTTAAACATACATACATCAACCATGCG 19823 | ||| | || || || || || | ||||| Sbjct 561852 CAGATTCTGAAAATCCACACCTCGAAGATGCG 561883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451088189070