Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 170 6e-37 seq96 159 1e-33 seq55 159 1e-33 seq12 87.8 5e-12 seq5 87.8 5e-12 >seq7 Length=756160 Score = 170 bits (188), Expect = 6e-37 Identities = 462/704 (66%), Gaps = 11/704 (2%) Strand=Plus/Plus Query 349200 CTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTG 349259 |||||||||| ||||| ||||| || || || || || | | | | | |||| || Sbjct 509549 CTATAGGAATTGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCAGAGATGACCGCA 509608 Query 349260 TAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCG 349319 | || || ||||| || || || |||||| |||| ||||| || | |||||| || |||| Sbjct 509609 TTGAGATCATTGCCAACGACCAGGGTAACCGAACCACGCCCTCCTTCGTTGCCTTCACCG 509668 Query 349320 AAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATA 349379 | || |||||| | || || ||| | || || || || | || || || || | Sbjct 509669 ATACCGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCGGCCAACA 509728 Query 349380 CGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAA 349435 | || || || || |||||||| |||||| | | || | ||| | || || Sbjct 509729 CCGTCTTCGACGCCAAGCGACTCATTGGTCGCAAGTTCGCCGACCCTGAGGTC----CAG 509784 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | || | || || || || || | || | | | | |||| || ||| | | Sbjct 509785 GCCGACATGAAGCACTTCCCCTTCAAGGTCAT--CGACCGT-GGTGGAAAGCCAGTCGTC 509841 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 ||||| || | || || || | || ||||| ||||| ||||| || || ||||| Sbjct 509842 GAGGTCGAGTTCAAGGGCGAGAAGAAGCAATTCACCCCCGAGGAAATCTCCTCCATGGTC 509901 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 || || || ||| || | || || ||||| | |||| ||| || | | || ||| Sbjct 509902 TTGGTCAAGATGCGTGAGACCGCCGAGGCATACCTTGGTGGAACCGTCAACAACGCCGTT 509961 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || || || || | || |||||||| || || || || || || Sbjct 509962 GTCACCGTCCCCGCATACTTCACCGACTCCCAGCGTCAAGCTACCAAGGACGCCGGTCTG 510021 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | || ||||| |||| || || || ||||| || || || |||||||| Sbjct 510022 ATTGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCCACCGCCGCTGCTATTGCATAC 510081 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | || || || |||| || || ||| | |||||||| Sbjct 510082 GGTCTCGACAAGAAGGTCGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGGTGGA 510141 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || ||||| || | |||||| Sbjct 510142 ACCTTCGATGTCTCCCTCCTGACCATTGAGGAGGGTATCTTCGAAGTCAAGTCTACTGCT 510201 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 ||||| || || | || || ||||| || || || ||||| || Sbjct 510202 GGTGACACCCACTTGGGAGGTGAAGACTTCGACAACCGTCTTGT 510245 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || ||||| || ||||| || || || || Sbjct 415660 CATACCACCACGAAGACGGAGAACTAAGTGCAGGGTAGATTCCTTTTGGATGTTGTAGTC 415601 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| ||||| || ||||| || ||||| || || |||||||| ||||| || Sbjct 415600 GGACAAGGTTCGACCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCCGG 415541 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| ||||| ||||| || | ||| || || || |||| ||| || | ||| Sbjct 415540 GGGAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGATTC 415481 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | ||||| |||||| ||||| || || || || || || ||||| Sbjct 415480 CACTTCCAATGTAATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 415430 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || ||||| || ||||||||||| || || || || | Sbjct 415152 TTTGCATACCGCCACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGT 415093 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || || || |||||||| || || || ||||| ||||||||||| | Sbjct 415092 AGTCAGAGAGAGTGCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGT 415033 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || | || ||||| || || | || || | Sbjct 415032 CGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGG 414973 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||||| ||||| || | ||||| ||||| Sbjct 414972 ATTCAACCTCAAGAGTGATGGTCTTGCCGGT 414942 Score = 131 bits (144), Expect = 5e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | || || || ||||| || || || || | Sbjct 415436 TTTGCATACCACCACGGAGACGGAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGT 415377 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || ||||| || ||||| ||||| |||||||| |||| Sbjct 415376 AGTCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGAT 415317 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || || || || || | || ||||| || || | |||||| | Sbjct 415316 CAGGAGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCAGAAG 415257 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 ||| || || || || | ||||| ||||| || || || |||| Sbjct 415256 ATTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 415212 >seq96 Length=182788 Score = 159 bits (176), Expect = 1e-33 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || |||||||| || ||||| || || || || Sbjct 166667 CATACCACCACGAAGACGGAGAACTAAGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTC 166608 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| ||||| || || || || |||||||| || |||||||| ||||| || Sbjct 166607 GGACAAGGTTCGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGTTGTTGATCCGG 166548 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| ||||| ||||| || | ||| || || || |||| ||| || | || Sbjct 166547 GGGAATGCCTTCCTTATCTTGAATCTTTGATTTGACGTTGTCGATCGTATCCGAGGACTC 166488 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | ||| | |||||| ||||| || || || || || || ||||| Sbjct 166487 CACTTCCAATGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 166437 Score = 131 bits (144), Expect = 5e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||||| || ||||| || || || || | Sbjct 166443 TTTGCATACCACCACGGAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGT 166384 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || ||||| || ||||| ||||| |||||||| |||| Sbjct 166383 AGTCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGTTGAT 166324 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| || || || || || || || | || ||||| || || | ||||| | Sbjct 166323 CAGGGGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTGTCAGAGG 166264 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 ||| || || || || | ||||| ||||| || || || |||| Sbjct 166263 ATTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 166219 Score = 129 bits (142), Expect = 2e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || ||||| || ||||||||||| || || || || | Sbjct 166159 TTTGCATACCGCCACGAAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGT 166100 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || |||||||| || || || ||||| ||||||||||| | Sbjct 166099 AGTCGGAGAGAGTGCGACCGTCCTCAAGTTGCTTGCCCGCGAAGATCAGACGTTGCTGGT 166040 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || || || || | || ||||| || || | ||||| | Sbjct 166039 CCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGG 165980 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||||| ||||| || | ||||| ||||| Sbjct 165979 ATTCAACCTCAAGAGTGATGGTCTTGCCGGT 165949 Score = 118 bits (130), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || ||||| ||| ||||| || || ||||| || || || ||||| Sbjct 166875 AGACCAAG-TGCAGAGTGCTCTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGACCATCC 166817 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || ||||||||||| | || ||||| || || || || ||||| |||||| Sbjct 166816 TCCAACTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTATCC 166757 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || ||||| ||||| | || |||| |||||||| | ||| | |||| Sbjct 166756 TGGATCTTGGACTTCACATTGTCAATTGTGTCTGATGACTCAACTTCTAATGTGATTGTC 166697 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | || || || || |||||||| Sbjct 166696 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 166665 >seq55 Length=331452 Score = 159 bits (176), Expect = 1e-33 Identities = 483/745 (65%), Gaps = 17/745 (2%) Strand=Plus/Minus Query 349200 CTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTG 349259 |||||||||| ||||| ||||| || || || || || | | | | | |||| || Sbjct 246043 CTATAGGAATTGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCAGAGATGACCGCA 245984 Query 349260 TAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCG 349319 | || || ||||| || || || |||||| |||| || || || | |||||| || |||| Sbjct 245983 TTGAGATCATTGCCAACGACCAGGGTAACCGAACCACACCCTCCTTCGTTGCCTTCACCG 245924 Query 349320 AAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATA 349379 | || |||||| | || || ||| | || || || || | || || || || | Sbjct 245923 ATACCGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCGGCCAACA 245864 Query 349380 CGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAA 349435 | || || || || |||||||| || ||| | | || | ||| | || || Sbjct 245863 CTGTCTTCGACGCCAAGCGACTCATCGGTCGCAAGTTCGCCGACCCTGAGGTC----CAG 245808 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATT 349492 | || | || || || || || | || || ||| ||| | || ||| | Sbjct 245807 GCCGACATGAAGCACTTCCCCTTCAAGGTCGTC------GACCGTGCTGGCAAGCCAGTC 245754 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 | ||||| || | || || || | || ||||| ||||| ||||| || || ||| Sbjct 245753 GTCGAGGTCGAGTTCAAGGGCGAGAAGAAGCAATTCACCCCCGAGGAAATCTCCTCCATG 245694 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 || || || || ||| || | || || |||| | |||| ||| || | | || Sbjct 245693 GTCTTGGTCAAGATGCGTGAGACCGCCGAGTCATACCTTGGTGGAACTGTCAACAACGCC 245634 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 ||| | ||||| || || || || | || |||||||| || || || || || || Sbjct 245633 GTTGTCACTGTCCCCGCATACTTCACCGACTCCCAGCGTCAAGCTACCAAGGACGCCGGT 245574 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 ||||| || | || || || |||| || || || ||||| || || || |||||| Sbjct 245573 CTGATTGCCGGTCTCAACGTCCTCCGAATCATCAACGAGCCCACCGCCGCTGCTATTGCA 245514 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || || || || | | || || || |||| || || ||| | |||||| Sbjct 245513 TACGGTCTCGACAAGAAGGTCGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGGT 245454 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || || || ||||| || || | || |||| ||||| || || ||||| || | ||| Sbjct 245453 GGAACCTTCGATGTCTCCCTCTTGACCATTGAGGAGGGTATCTTCGAAGTCAAGTCTACT 245394 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 |||||||| || || | || || || || || || || |||||||| || || || Sbjct 245393 GCTGGTGACACTCACTTGGGAGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTA 245334 Query 349913 AAAGAATTTAAGCGTCAAGCTAAAA 349937 || ||||| || || || ||||| Sbjct 245333 AACGAATTCAAACGCAAATTTAAAA 245309 >seq12 Length=680961 Score = 87.8 bits (96), Expect = 5e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||||||||| ||||| |||||||| || | ||| || | ||| || ||||| |||||| Sbjct 166818 ACACCAGCAAAATGGAAGGTATTAAGTGTCATTTGCGTGGCGGGTTCTCCAATAGACTGC 166759 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAATAGC 377594 || || | || || ||||| |||||||| ||||| | ||| Sbjct 166758 GCAGCGAGGACTCCGACCATCTCTCCAGGGTTGACGAGAGC 166718 >seq5 Length=878710 Score = 87.8 bits (96), Expect = 5e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||||||||| ||||| |||||||| || | ||| || | ||| || ||||| |||||| Sbjct 157954 ACACCAGCAAAATGGAAGGTATTAAGTGTCATTTGCGTGGCGGGTTCTCCAATAGACTGC 157895 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAATAGC 377594 || || | || || ||||| |||||||| ||||| | ||| Sbjct 157894 GCAGCGAGGACTCCGACCATCTCTCCAGGGTTGACGAGAGC 157854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515234714004242