Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq153 201 1e-46 seq155 161 1e-34 seq10 120 3e-22 seq75 89.7 6e-13 seq15 89.7 6e-13 >seq153 Length=80566 Score = 201 bits (222), Expect = 1e-46 Identities = 509/760 (67%), Gaps = 28/760 (4%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCG--TGTCCGTGAGACGT 53249 ||||||| || || | || || |||||||| || | | ||| | || ||||| | Sbjct 61138 TCATGCGAGTGGCAGTTGGAATTCACGGTGATGATATCGAGGCGGCTATC---GAGACAT 61082 Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || |||| ||| | || | ||| || ||||| | || || || ||| || |||| Sbjct 61081 ACAACTTGATGTCCAGCAAATTCTTCACTCACGCATCTCCCACTCTCTTCTCGGCCGGTA 61022 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | || | || ||||||||| | | |||||||| ||| || |||| Sbjct 61021 CCCCACAGGCCCAACTTTCATCATGCTTCCTGATCGACATGAAGGAGGACAGTATTGACG 60962 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| ||||| ||| ||||| ||||| ||| | || || |||||| Sbjct 60961 GTATCTACGACACGCTAAAGACCTGTGCAATGATCTCAAAGAATGCTGGAGGCATCGGTC 60902 Query 53430 TCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || | | | ||| | || || | ||| | ||| || || || || | | Sbjct 60901 TCAACATCCACAGAA--TTCGGGCTACCGGGGCCTACATCGCCGGTACAAATGGAAACTC 60844 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | |||| || ||||| |||||||| |||||||||||||| || | |||||| | ||||| Sbjct 60843 CAATGGCATTGTGCCCATGCTCCGAGTCTTCAACAACACCGCAAGATACGTCGATCAGGG 60784 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| ||| |||| ||||||||||||||||| ||||| || || | | Sbjct 60783 TGGAAACAAGCGTCCGGGAGCGTTTGCCATCTACCTCGAGCCATGGCATGCGGATGTCTT 60724 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| || || || || ||| || || | || || | || ||| || || || | Sbjct 60723 TGAGTTCCTTGACCTCCGAAAGAACCATGGAAAAGAGGAAGTTCG-TGCACGCGATCTCT 60665 Query 53667 T-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 | ||| || ||||||||||| || ||||||||| | || |||||| ||| || ||| Sbjct 60664 TCTAC-GCCCTGTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACGGAGACTGG 60606 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAAC 53785 ||||||||||| ||||| ||||||||||| | || ||||| || ||||| | Sbjct 60605 ACTCTGATGTGCCCCAACGAATGCCCCGGCCTGGCAGACGTTTACGGGGATGAGTTCGAG 60546 Query 53786 GAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 | | || || ||| | || | |||| ||| |||| ||||||| Sbjct 60545 GCTCTCTACGAGAAATACGAGAGAGAAGGTAAGGGTCGC------AAGACTATCAAGGCT 60492 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGA-CGGGAACGCCGTACATGTG 53898 | | | ||| | | |||||| || ||| |||| ||||||| || | |||| Sbjct 60491 CAGAAACTCTGGTACTCCATCCTCGAGGCCCAAACCGAGACCGGGAAC-CCCTTCATGCT 60433 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||||| | |||| |||||||||||||||||| Sbjct 60432 CTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAAC 60393 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGAT---TCCACAGAAGAGTCTGATTGACATGA 55784 |||||| | ||| |||||| |||||||| || || || || | | | ||| Sbjct 59620 TCAAGGCTCTGTACAAGACGGTCTGGGAGATCTCTCAACGGACGA---TCGTCCAGATGG 59564 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 ||||||||||||||| | ||| || || |||||||| |||||||| |||| || | | Sbjct 59563 CTGCTGATCGTGGTGCCTTCATTGATCAATCCCAGTCGATGAACATCCACATGAAGGACC 59504 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | | ||| |||| | | | |||||||| || |||||| ||| || ||||| | Sbjct 59503 CAACGATGGGCAAGATCACCAGCATGCACTTCACTGGCTGGAAGTTGGGTCTGAAGACCG 59444 Query 55905 GTATGTACTATCTGCGGACC 55924 | ||||| || || || ||| Sbjct 59443 GCATGTATTACCTCCGCACC 59424 >seq155 Length=79386 Score = 161 bits (178), Expect = 1e-34 Identities = 377/557 (68%), Gaps = 14/557 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCG--TGTCCGTGAGACGT 53249 ||||||| || || | || || |||||||| || | | ||| | || ||||||| Sbjct 57234 TCATGCGAGTGGCAGTTGGAATTCACGGTGATGATATCGAGGCGGCTATC---GAGACGT 57178 Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || |||| ||| | || ||||| || || || | || || || ||| || |||| Sbjct 57177 ACAACTTGATGTCCAGCAAATACTTCACTCATGCATCTCCCACTCTCTTCTCGGCCGGTA 57118 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | || | || ||||||||| | | |||||||| ||| || |||| Sbjct 57117 CCCCACAGGCCCAACTTTCATCATGCTTCCTGATCGACATGAAGGAGGACAGTATTGACG 57058 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| ||||| ||| ||||| ||||| ||| | || || |||||| Sbjct 57057 GTATCTACGACACGCTAAAGACCTGTGCAATGATCTCAAAGAATGCTGGAGGCATCGGTC 56998 Query 53430 TCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || | | | ||| | || || | ||| | ||| || || || || | | Sbjct 56997 TCAACATCCACAGAA--TTCGGGCTACCGGGGCCTACATCGCCGGTACAAATGGGAACTC 56940 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | |||| || ||||| |||||||| |||||||||||||| || | || ||| | ||||| Sbjct 56939 CAATGGCATTGTGCCCATGCTCCGAGTCTTCAACAACACCGCAAGATATGTCGATCAGGG 56880 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| ||| |||| ||||| ||||||||||| ||||| || || | | Sbjct 56879 TGGAAACAAGCGTCCGGGAGCGTTTGCCATTTACCTCGAGCCATGGCATGCGGATGTCTT 56820 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| || || || || ||| || || | || || | || ||| || || || | Sbjct 56819 TGAGTTCCTTGACCTCCGAAAGAACCATGGAAAAGAGGAAGTTCG-TGCACGCGATCTTT 56761 Query 53667 T-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 | ||| || ||||||||||| || ||||||||| | || |||||| ||| || ||| Sbjct 56760 TCTAC-GCCCTGTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACGGAGACTGG 56702 Query 53726 TACCTGATGTGCCCGAA 53742 ||||||||||| || Sbjct 56701 ACTCTGATGTGCCCCAA 56685 >seq10 Length=717553 Score = 120 bits (132), Expect = 3e-22 Identities = 213/305 (70%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| ||||| ||||| |||||||||| ||| |||||||| |||| ||||| || | Sbjct 521919 GGTGACAGGCGGGTGAAGATGTAACGAGGGCTAGCAGCATCGCTGCCTCCAGCTAGTCTA 521978 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAG-GTTCAGGTTGTTGGCGCCCACAAAGTTTTG 117411 ||||||| ||||||||| || |||| ||| | |||||||| ||||| || || || Sbjct 521979 CTACCGAAGCTTCCACTCGGTTC-AAGACAGTTTACGTTGTTGGAACCCACGAAATTCTG 522037 Query 117412 AGCCAAGT----TGACAATCGTAC-CTTGGAGGCTCGCCTCACCATGGTGATACGCCGTC 117466 || ||| ||| | || | | ||||||| |||||||||||||| || || Sbjct 522038 GGC-AAGACCAATGATAGTCTGATTCATGGAGGCA----TCACCATGGTGATAAGCTGTG 522092 Query 117467 TGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTG 117526 | || | | ||| || |||| | | | || || ||||| | || ||| |||| Sbjct 522093 TTTTCGGAGATGTAACCGGCCAATTCAACAACTTTGGTGTCTCTGATGAGATTCCGCTTG 522152 Query 117527 AGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATC 117586 | ||||| || || || || ||||||| ||||| |||||||| || |||||| Sbjct 522153 AAACAGGCGTATATAACTTTACGCTGACCAGGCTTGAGACCATCGATGACTGAAGGGATA 522212 Query 117587 GAACG 117591 ||||| Sbjct 522213 GAACG 522217 >seq75 Length=245354 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || || || || | || || ||||| || || |||||||||||||| || || Sbjct 39199 ATCAACTCGTTTGAGAAGGTGAGTCCGGGCATCAGACCTCGCTTCTTCAACCAGAAAATA 39140 Query 74844 G-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTG 74902 | | || |||||||||||||| ||||| |||||||| ||||| || || || ||||| Sbjct 39139 GACGCA-AAGGAACCACTGAAAAAGATACCTTCGACCGCAGCAAATGCCACGAGACGTTG 39081 Query 74903 CGCGAA 74908 ||||| Sbjct 39080 GGCGAA 39075 >seq15 Length=607589 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842 ||||| || || || || | || || ||||| || || |||||||||||||| || || Sbjct 331019 ATCAACTCGTTTGAGAAGGTGAGTCCGGGCATCAGACCTCGCTTCTTCAACCAGAAAATA 331078 Query 74843 GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTG 74902 | | || |||||||||||||| ||||| |||||||| ||||| || || || ||||| Sbjct 331079 GACGCA-AAGGAACCACTGAAAAAGATACCTTCGACCGCAGCAAATGCCACGAGACGTTG 331137 Query 74903 CGCGAA 74908 ||||| Sbjct 331138 GGCGAA 331143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209064037200