Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq102 150 2e-31 seq38 150 2e-31 seq96 118 9e-22 seq7 113 4e-20 >seq102 Length=175646 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| |||| || ||||| ||||| | || Sbjct 56365 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTC 56306 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| || || |||||||| ||||| || |||||||| || Sbjct 56305 TGACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCA 56246 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | ||||||||| ||| | |||||| || ||| ||||||||||||| Sbjct 56245 GCAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAA 56186 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 56185 CATCCAGAAGGAGTCGAC 56168 >seq38 Length=423541 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| |||| || ||||| ||||| | || Sbjct 320177 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTC 320118 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| || || |||||||| ||||| || |||||||| || Sbjct 320117 TGACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCA 320058 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | ||||||||| ||| | |||||| || ||| ||||||||||||| Sbjct 320057 GCAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAA 319998 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 319997 CATCCAGAAGGAGTCGAC 319980 >seq96 Length=182788 Score = 118 bits (130), Expect = 9e-22 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057 |||| || || || ||||||||| | || || || || || ||| | || ||| | || | Sbjct 166219 TTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCCTCTGACACCATCG 166278 Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117 | | ||||| || || |||||||| || || || || || |||||||| ||| | | Sbjct 166279 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAACAACGTCTGA 166338 Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177 | | ||| ||||| ||| | || || | ||| | ||||| |||||||| || |||| Sbjct 166339 TCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGG 166398 Query 27178 AGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| | || |||||| | ||| | || ||||| || Sbjct 166399 AGTCGACCCTTCACTTGGTTCTCCGTCTCCGTGGTGGTAT 166438 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | || || | ||||| || | || Sbjct 166665 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCA 166724 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || || || |||||||| ||||| || || Sbjct 166725 GACACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAG 166784 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || ||||| || || ||| | |||||||||| Sbjct 166785 CAGCGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGCGATTACAAC 166844 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||| || | || ||||| |||||| | || || ||| Sbjct 166845 ATCCAAAAGGAGAGCACTCTGCACTTGGTCTTGCGTCTTCGTGGCGGC 166892 >seq7 Length=756160 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057 |||| || || || ||||||||| | || || || || || ||| | || || | || | Sbjct 415212 TTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGATACCATCG 415271 Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117 | | ||||| || || |||||||| || || || || || |||||||| ||| | | Sbjct 415272 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTGA 415331 Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177 | | ||| ||||| ||| | || || | ||| | ||||| |||||||| || |||| Sbjct 415332 TCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGG 415391 Query 27178 AGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| | || |||||| | ||| | || ||||| || Sbjct 415392 AGTCGACCCTGCACTTGGTTCTCCGTCTCCGTGGTGGTAT 415431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || || | ||||| || | || Sbjct 415658 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCA 415717 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || || || |||||||| ||||| || || Sbjct 415718 GACACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAG 415777 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || ||| | || || || ||| | |||||||||| Sbjct 415778 CAACGATTGATCTTCGCTGGTAAGCAACTAGAGGATGGTCGCACCTTGAGCGATTACAAC 415837 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||| || | || ||||| |||||| | || || ||| Sbjct 415838 ATCCAAAAGGAGAGCACTCTGCACTTGGTCTTGCGTCTTCGTGGAGGC 415885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434912887409280