Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq102 107 1e-18
seq38 107 1e-18
seq96 89.7 3e-13
seq7 89.7 3e-13
>seq102
Length=175646
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| || || || || || |
Sbjct 56364 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 56305
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | ||||| ||||| | || || || ||
Sbjct 56304 GACACCATTGACAATGTCAAATCCAAGA-TCCAAGACAAGGAAGGGATCCCACCCGACCA 56246
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || | || || |||||||| ||||| ||||||| ||||| | |||||||||
Sbjct 56245 GCAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAA 56186
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 56185 CATCCAGAAGGAGTCGAC 56168
>seq38
Length=423541
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| || || || || || |
Sbjct 320176 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 320117
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | ||||| ||||| | || || || ||
Sbjct 320116 GACACCATTGACAATGTCAAATCCAAGA-TCCAAGACAAGGAAGGGATCCCACCCGACCA 320058
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || | || || |||||||| ||||| ||||||| ||||| | |||||||||
Sbjct 320057 GCAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAA 319998
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 319997 CATCCAGAAGGAGTCGAC 319980
>seq96
Length=182788
Score = 89.7 bits (98), Expect = 3e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || ||||| || ||||| | |||||||| || |
Sbjct 166665 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCA 166724
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | || || ||||| | || || || ||
Sbjct 166725 GACACAATTGACAATGTGAAGTCCAAGA-TCCAGGATAAGGAAGGCATCCCACCGGACCA 166783
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || ||||| || || || |||| || | ||||| || ||||||||||
Sbjct 166784 GCAGCGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGCGATTACAA 166843
Query 23790 CATACAAAAAGAG 23802
||| ||||| |||
Sbjct 166844 CATCCAAAAGGAG 166856
>seq7
Length=756160
Score = 89.7 bits (98), Expect = 3e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || ||||| || ||||| | |||||||| || |
Sbjct 415658 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCA 415717
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | || || ||||| | || || || ||
Sbjct 415718 GACACAATTGACAATGTGAAGTCCAAGA-TCCAGGATAAGGAAGGCATCCCACCGGACCA 415776
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || || || || || || || ||||| || || | ||||| || ||||||||||
Sbjct 415777 GCAACGATTGATCTTCGCTGGTAAGCAACTAGAGGATGGTCGCACCTTGAGCGATTACAA 415836
Query 23790 CATACAAAAAGAG 23802
||| ||||| |||
Sbjct 415837 CATCCAAAAGGAG 415849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338005422835112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |