Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq102 107 1e-18 seq38 107 1e-18 seq96 89.7 3e-13 seq7 89.7 3e-13 >seq102 Length=175646 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 56364 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 56305 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| ||||| | || || || || Sbjct 56304 GACACCATTGACAATGTCAAATCCAAGA-TCCAAGACAAGGAAGGGATCCCACCCGACCA 56246 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || || |||||||| ||||| ||||||| ||||| | ||||||||| Sbjct 56245 GCAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAA 56186 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 56185 CATCCAGAAGGAGTCGAC 56168 >seq38 Length=423541 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 320176 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 320117 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| ||||| | || || || || Sbjct 320116 GACACCATTGACAATGTCAAATCCAAGA-TCCAAGACAAGGAAGGGATCCCACCCGACCA 320058 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || || |||||||| ||||| ||||||| ||||| | ||||||||| Sbjct 320057 GCAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAA 319998 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 319997 CATCCAGAAGGAGTCGAC 319980 >seq96 Length=182788 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| | |||||||| || | Sbjct 166665 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCA 166724 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || ||||| | || || || || Sbjct 166725 GACACAATTGACAATGTGAAGTCCAAGA-TCCAGGATAAGGAAGGCATCCCACCGGACCA 166783 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || || || |||| || | ||||| || |||||||||| Sbjct 166784 GCAGCGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGCGATTACAA 166843 Query 23790 CATACAAAAAGAG 23802 ||| ||||| ||| Sbjct 166844 CATCCAAAAGGAG 166856 >seq7 Length=756160 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || ||||| | |||||||| || | Sbjct 415658 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCA 415717 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || ||||| | || || || || Sbjct 415718 GACACAATTGACAATGTGAAGTCCAAGA-TCCAGGATAAGGAAGGCATCCCACCGGACCA 415776 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || || || || ||||| || || | ||||| || |||||||||| Sbjct 415777 GCAACGATTGATCTTCGCTGGTAAGCAACTAGAGGATGGTCGCACCTTGAGCGATTACAA 415836 Query 23790 CATACAAAAAGAG 23802 ||| ||||| ||| Sbjct 415837 CATCCAAAAGGAG 415849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005422835112