Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq102 156 1e-32 seq38 156 1e-32 seq59 134 3e-26 seq10 134 3e-26 seq7 131 4e-25 seq96 125 2e-23 >seq102 Length=175646 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 56361 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 56302 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 56301 ACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAGCAA 56242 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || |||||||| || | || ||| ||||||| ||| || Sbjct 56241 CGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAACATC 56182 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 56181 CAGAAGGAGTCGACTCTTCACCTCGT 56156 >seq38 Length=423541 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 320173 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 320114 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 320113 ACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAGCAA 320054 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || |||||||| || | || ||| ||||||| ||| || Sbjct 320053 CGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAACATC 319994 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 319993 CAGAAGGAGTCGACTCTTCACCTCGT 319968 >seq59 Length=321881 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||| ||||| || ||| ||||| ||| Sbjct 265948 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATC 265889 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || |||||| ||||| |||||||| || ||||| || ||||||||||| || || Sbjct 265888 GACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTG 265829 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||||||||| || || || || || | |||||| | || || ||| |||| || Sbjct 265828 ATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACTCTTTCAGACTACAACATCCAGAA 265770 >seq10 Length=717553 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||| ||||| || ||| ||||| ||| Sbjct 19936 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATC 19995 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || |||||| ||||| |||||||| || ||||| || ||||||||||| || || Sbjct 19996 GACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTG 20055 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||||||||| || || || || || | |||||| | || || ||| |||| || Sbjct 20056 ATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACTCTTTCAGACTACAACATCCAGAA 20114 >seq7 Length=756160 Score = 131 bits (144), Expect = 4e-25 Identities = 149/199 (75%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || ||||| || || || |||||||||||||| ||| || || |||||||| Sbjct 415214 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGATACCATCGAC 415273 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| ||||| || ||||| || || |||||||| || || ||||| || ||| Sbjct 415274 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTGATC 415333 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || || ||||| ||||| | || || |||| || ||| |||| || || Sbjct 415334 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 415393 Query 178113 TCAACACTGCATCTTGTTT 178131 || || ||||| |||| || Sbjct 415394 TCGACCCTGCA-CTTGGTT 415411 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct 414940 TCACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCCGACACCATCGACAATGTCAAGT 414999 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| || ||||| || || || ||||| ||||||||||| || |||||||| || | Sbjct 415000 CCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAACGTCTGATCTTCGCGGGCA 415059 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || || || || || | ||||| | || || ||| |||| || || || || || | Sbjct 415060 AGCAACTTGAGGACGGTCGCACTCTCTCTGACTACAACATCCAGAAGGAGTCTACTCTCC 415119 Query 178123 ATCTTGT 178129 | ||||| Sbjct 415120 ACCTTGT 415126 Score = 109 bits (120), Expect = 1e-18 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||| | || || || |||||| Sbjct 415661 CAGATCTTCGTCAAGACCTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCAGAC 415720 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || ||||| ||||| |||||||||||| Sbjct 415721 ACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAGCAA 415780 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | |||||||| || || || || || ||||| | || |||| |||||| ||| | Sbjct 415781 CGATTGATCTTCGCTGGTAAGCAACTAGAGGATGGTCGCAC-CTTGAGCGATTACAACAT 415839 Query 178103 CCAAAAAGA 178111 |||||| || Sbjct 415840 CCAAAAGGA 415848 >seq96 Length=182788 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct 165947 TCACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCTGACACCATCGACAATGTCAAGT 166006 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| || ||||| || || || || |||||||||||||| || |||||||| || | Sbjct 166007 CCAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAGCAACGTCTGATCTTCGCGGGCA 166066 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || || || || || | ||||| |||| || ||| |||| || || || || || | Sbjct 166067 AGCAACTTGAGGACGGTCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTCC 166126 Query 178123 ATCTTGT 178129 | ||||| Sbjct 166127 ACCTTGT 166133 Score = 125 bits (138), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || ||||| || || || |||||||||||||| ||| ||| ||||||||||| Sbjct 166221 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCCTCTGACACCATCGAC 166280 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| ||||| || ||||| || || || || || || || ||||| || ||| Sbjct 166281 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAACAACGTCTGATC 166340 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || || ||||| ||||| | || || |||| || ||| |||| || || Sbjct 166341 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 166400 Query 178113 TCAACACTGCATCTTGTTT 178131 || || || || |||| || Sbjct 166401 TCGACCCTTCA-CTTGGTT 166418 Score = 104 bits (114), Expect = 6e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || ||||| | || || || |||||| Sbjct 166668 CAGATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCAGAC 166727 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 166728 ACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAGCAG 166787 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | ||||| || || || ||| | || ||||| | || |||| |||||| ||| | Sbjct 166788 CGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCAC-CTTGAGCGATTACAACAT 166846 Query 178103 CCAAAAAGA 178111 |||||| || Sbjct 166847 CCAAAAGGA 166855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203715561274716