Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq102 156 1e-32
seq38 156 1e-32
seq59 134 3e-26
seq10 134 3e-26
seq7 131 4e-25
seq96 125 2e-23
>seq102
Length=175646
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| |||||||| || |||
Sbjct 56361 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 56302
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || |||||| ||||| || ||||| ||||| ||||| || |||||||||
Sbjct 56301 ACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAGCAA 56242
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || || |||||||| || | || ||| ||||||| ||| ||
Sbjct 56241 CGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAACATC 56182
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 56181 CAGAAGGAGTCGACTCTTCACCTCGT 56156
>seq38
Length=423541
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| |||||||| || |||
Sbjct 320173 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 320114
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || |||||| ||||| || ||||| ||||| ||||| || |||||||||
Sbjct 320113 ACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAGCAA 320054
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || || |||||||| || | || ||| ||||||| ||| ||
Sbjct 320053 CGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACCCTTTCCGATTACAACATC 319994
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 319993 CAGAAGGAGTCGACTCTTCACCTCGT 319968
>seq59
Length=321881
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || || || || |||||||| ||||| || ||| ||||| |||
Sbjct 265948 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATC 265889
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || |||||| ||||| |||||||| || ||||| || ||||||||||| || ||
Sbjct 265888 GACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTG 265829
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| || || || || || | |||||| | || || ||| |||| ||
Sbjct 265828 ATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACTCTTTCAGACTACAACATCCAGAA 265770
>seq10
Length=717553
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || || || || |||||||| ||||| || ||| ||||| |||
Sbjct 19936 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATC 19995
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || |||||| ||||| |||||||| || ||||| || ||||||||||| || ||
Sbjct 19996 GACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTG 20055
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| || || || || || | |||||| | || || ||| |||| ||
Sbjct 20056 ATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACTCTTTCAGACTACAACATCCAGAA 20114
>seq7
Length=756160
Score = 131 bits (144), Expect = 4e-25
Identities = 149/199 (75%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || ||||| || || || |||||||||||||| ||| || || ||||||||
Sbjct 415214 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGATACCATCGAC 415273
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| ||||| ||||| || ||||| || || |||||||| || || ||||| || |||
Sbjct 415274 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTGATC 415333
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||| || || || ||||| ||||| | || || |||| || ||| |||| || ||
Sbjct 415334 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 415393
Query 178113 TCAACACTGCATCTTGTTT 178131
|| || ||||| |||| ||
Sbjct 415394 TCGACCCTGCA-CTTGGTT 415411
Score = 122 bits (134), Expect = 2e-22
Identities = 139/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| || ||||| ||| ||| ||||||||||| || |||||
Sbjct 414940 TCACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCCGACACCATCGACAATGTCAAGT 414999
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| || ||||| || || || ||||| ||||||||||| || |||||||| || |
Sbjct 415000 CCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAACGTCTGATCTTCGCGGGCA 415059
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| || || || || || | ||||| | || || ||| |||| || || || || || |
Sbjct 415060 AGCAACTTGAGGACGGTCGCACTCTCTCTGACTACAACATCCAGAAGGAGTCTACTCTCC 415119
Query 178123 ATCTTGT 178129
| |||||
Sbjct 415120 ACCTTGT 415126
Score = 109 bits (120), Expect = 1e-18
Identities = 139/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || ||||| || ||||| | || || || ||||||
Sbjct 415661 CAGATCTTCGTCAAGACCTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCAGAC 415720
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || ||||| ||||| ||||||||||||
Sbjct 415721 ACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAGCAA 415780
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
||| | |||||||| || || || || || ||||| | || |||| |||||| ||| |
Sbjct 415781 CGATTGATCTTCGCTGGTAAGCAACTAGAGGATGGTCGCAC-CTTGAGCGATTACAACAT 415839
Query 178103 CCAAAAAGA 178111
|||||| ||
Sbjct 415840 CCAAAAGGA 415848
>seq96
Length=182788
Score = 125 bits (138), Expect = 2e-23
Identities = 140/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| || ||||| ||| ||| ||||||||||| || |||||
Sbjct 165947 TCACCGGCAAGACCATCACTCTTGAGGTTGAATCCTCTGACACCATCGACAATGTCAAGT 166006
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| || ||||| || || || || |||||||||||||| || |||||||| || |
Sbjct 166007 CCAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAGCAACGTCTGATCTTCGCGGGCA 166066
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| || || || || || | ||||| |||| || ||| |||| || || || || || |
Sbjct 166067 AGCAACTTGAGGACGGTCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTCC 166126
Query 178123 ATCTTGT 178129
| |||||
Sbjct 166127 ACCTTGT 166133
Score = 125 bits (138), Expect = 2e-23
Identities = 148/199 (74%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || ||||| || || || |||||||||||||| ||| ||| |||||||||||
Sbjct 166221 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCCTCTGACACCATCGAC 166280
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| ||||| ||||| || ||||| || || || || || || || ||||| || |||
Sbjct 166281 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAACAACGTCTGATC 166340
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||| || || || ||||| ||||| | || || |||| || ||| |||| || ||
Sbjct 166341 TTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAG 166400
Query 178113 TCAACACTGCATCTTGTTT 178131
|| || || || |||| ||
Sbjct 166401 TCGACCCTTCA-CTTGGTT 166418
Score = 104 bits (114), Expect = 6e-17
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || ||||| || ||||| | || || || ||||||
Sbjct 166668 CAGATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTAGAAGTTGAGTCATCAGAC 166727
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || ||||| ||||| |||||||||||
Sbjct 166728 ACAATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAGCAG 166787
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
||| | ||||| || || || ||| | || ||||| | || |||| |||||| ||| |
Sbjct 166788 CGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCAC-CTTGAGCGATTACAACAT 166846
Query 178103 CCAAAAAGA 178111
|||||| ||
Sbjct 166847 CCAAAAGGA 166855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203715561274716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |