Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq50 120 6e-22 seq223 86.0 1e-11 >seq50 Length=575836 Score = 120 bits (132), Expect = 6e-22 Identities = 180/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || || || | || |||||||| | | || ||| | || || ||| Sbjct 303417 ATCATCACCGAGGCCGTCGAGATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTG-CGC 303359 Query 230446 CTTATT-GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 || | || ||||||||| || ||| | ||||||||||| ||||| |||||||| | Sbjct 303358 ACTACTCGGTATGAACGCTACTCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCT 303299 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | | || ||||| || || |||||| | | |||||||| | || ||||| Sbjct 303298 GCTCCTGGCTCTTGGCAACCCCAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGA 303239 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 | ||| |||||| || ||||||||||||||||| |||||||| |||| || |||| Sbjct 303238 GAACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAA 303179 Query 230625 GCCTGGTGTGATG 230637 | | ||||| ||| Sbjct 303178 GGCCGGTGTCATG 303166 >seq223 Length=194016 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 319471 GTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTA 319530 ||||| ||||||||||||||||| |||||||| || || |||| || | || || | Sbjct 115190 GTGCAGACAGCGTCGAGGAACCCAGAGTCGTGGGAGACGATCAAGCTGGTAATCTCGGTG 115131 Query 319531 AGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGC 319590 || | | ||||| || | ||| ||||| | ||| | |||||||| ||| Sbjct 115130 TGGCTCTTGAGGTACTCCTGGAGCCAGGCAACGTTGGCGACATCCAAGTGGTTGGTAGGC 115071 Query 319591 TCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATT 319650 ||||| || ||||| | | || || ||||| || || || | ||| || ||||| Sbjct 115070 TCGTCGAGCAGCAGAACGTCGGCACGCATAAGCATGGCGCGCGCCAAAGCAAGCTTCATC 115011 Query 319651 TTCCACCCTCCGG--AAAGAG 319669 ||||| ||||||| |||||| Sbjct 115010 TTCCAACCTCCGGACAAAGAG 114990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819418960940