Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq50 201 1e-46 seq53 127 2e-24 seq136 118 1e-21 seq170 102 8e-17 >seq50 Length=575836 Score = 201 bits (222), Expect = 1e-46 Identities = 214/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||| ||||| || |||||||||| ||||||| | || || ||| Sbjct 304071 TGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTCTCC 304012 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 |||||| | ||||||| | |||| | |||||| |||||||| |||||| ||| Sbjct 304011 AAGGACCTGCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCCCAC 303952 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || || ||||| ||| ||| |||||||||||||||||||| |||||||| ||| Sbjct 303951 GTCCTCGCTTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAATCTCGTCGAGCGGTTC 303892 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 || ||||| || | |||| || || ||||||||||| || |||||| ||||| Sbjct 303891 TCTGGTGAGGTACAAATTCCCGAAGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAA 303832 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| ||| | || | || || ||| |||||||| ||| Sbjct 303831 AACGTCCACGCCGAGACATACTCTCTCCTGATCGACACATAC 303790 Score = 154 bits (170), Expect = 2e-32 Identities = 315/459 (69%), Gaps = 13/459 (3%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || || |||||| | | || | | |||||| | | || | Sbjct 303677 AGAAGGCCGACTGGGCCCTACGATGGATCTCGGACAAGAACTCTACCTTCGCCAACCGTC 303618 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || ||||| || |||||||||||| ||||||| || ||||| |||| || | Sbjct 303617 TCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCGTTCGCGTCCATCTTCT 303558 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || || |||||||| || || || || |||||||| || | | Sbjct 303557 GGCTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTTTCTAATGAGCTCATTTCTCGTG 303498 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG- 117220 ||||||| |||| |||||||| ||| || ||||| | || | || | |||| Sbjct 303497 ACGAGGGCATGCACACAGACTTTGCTTGTCTGTTGTTC---TCTCTGCT-CAACAACCGT 303442 Query 117221 ---AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277 ||| | || || ||| ||||||| || |||| || |||||| ||| Sbjct 303441 CCAAGCAAAGATGCTGTGCAGGCCATCATCACCGAGGCCGTCGAGATTGAGCAGGAGTTC 303382 Query 117278 CTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAAT 117335 || |||| || || || |||| || || || | || || | | |||| || | Sbjct 303381 CTGTCCGATGCTCT-CCCCTGCGCACTACTCGGTATGAA-CGCTACTCTCATGTGCCAGT 303324 Query 117336 ACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACA 117395 |||||||||||||||||||| | ||||| || | || | | | ||||| |||||||| Sbjct 303323 ACATCGAGTTCGTCGCCGACCGTCTGCTCCTGGCTCTTGGCAACCCCAAGTACTACAACG 303264 Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 || ||||||| | ||||| ||| | |||||| |||| Sbjct 303263 CGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 303225 >seq53 Length=112647 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||| ||| | || || || | | Sbjct 69895 ATGCAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCG 69836 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 69835 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 69776 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || |||||||| || | ||||| ||| |||||||| Sbjct 69775 CAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACACTCTCGGACTACAAT 69716 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | |||||||| | ||| | || || | |||||| Sbjct 69715 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTGCGTGGCGGC 69668 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||| ||| | || || || | | Sbjct 70123 ATGCAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCG 70064 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 70063 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 70004 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || |||||||| |||| || || || ||||||||| Sbjct 70003 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGTACGCTATCAGACTACAAC 69944 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 69943 ATCCAGAAGGA 69933 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| |||||||| |||| ||||| | |||| | | | | |||| ||||| Sbjct 70327 ACCGGCAAGACCATCACTCTCGAAGTCGAGTCATCCGATACCATCGACAACG-TCAAGAG 70269 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| ||||| | || ||||| || | |||| ||| ||||| Sbjct 70268 CAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAGCAGCGCTTGATCTTCGCTGGCAA 70209 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | |||||| | |||||||||||||||||||||| |||| || || Sbjct 70208 GCAGCTCGAAGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAGTCCACACTACA 70149 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916 || || | ||| || | || || Sbjct 70148 CCTTGTCCTACGCCTGCGTGGTGG 70125 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| || |||||| |||| || || | |||||| | | | |||| ||||| Sbjct 70613 TCACCGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAG 70555 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| || ||||| || | |||||||| || || |||| || ||| Sbjct 70554 AGCAAGATTCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGCCTGATCTTTGCCGGC 70495 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | || ||||| |||||||| |||||||||||| |||| || Sbjct 70494 AAGCAGCTTGAGGATGGTCGTACCCTTTCGGACTACAATATCCAGAAGGAGTCCACCCTC 70435 Query 40891 CATCTAGT 40898 || || || Sbjct 70434 CACCTCGT 70427 >seq136 Length=202766 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || || |||| ||| ||||| ||||| || Sbjct 66899 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAG 66958 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || |||||||||||||||||||||| | ||||| || || ||| || Sbjct 66959 GATGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 67018 Query 40903 CGCTTGAGGGGCGGCGGC 40920 ||| || | || || ||| Sbjct 67019 CGCCTGCGTGGTGGTGGC 67036 >seq170 Length=170908 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| ||| |||||||||| || | |||| ||| ||||| ||||| || Sbjct 129804 GACAAGGAAGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAG 129745 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| |||||||| |||||||||||||||||||||| | || || || || || Sbjct 129744 GACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGT 129689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217023198880